Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACGH52_RS37345 Genome accession   NZ_CP172447
Coordinates   8322463..8322585 (-) Length   40 a.a.
NCBI ID   WP_079252552.1    Uniprot ID   -
Organism   Streptomyces sp. BBFR25     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8317463..8327585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGH52_RS37325 (ACGH52_37325) - 8317548..8318093 (+) 546 WP_059297182.1 hypothetical protein -
  ACGH52_RS37330 (ACGH52_37330) - 8318195..8319055 (+) 861 WP_399946015.1 MerR family transcriptional regulator -
  ACGH52_RS37335 (ACGH52_37335) - 8319084..8320802 (-) 1719 WP_399946018.1 PP2C family protein-serine/threonine phosphatase -
  ACGH52_RS37340 (ACGH52_37340) - 8321070..8322380 (+) 1311 WP_399946021.1 phytase -
  ACGH52_RS37345 (ACGH52_37345) cytR 8322463..8322585 (-) 123 WP_079252552.1 substrate-binding domain-containing protein Regulator
  ACGH52_RS37350 (ACGH52_37350) - 8322601..8323554 (-) 954 WP_399946024.1 SDR family NAD(P)-dependent oxidoreductase -
  ACGH52_RS37355 (ACGH52_37355) - 8323969..8324892 (+) 924 WP_399946027.1 LLM class F420-dependent oxidoreductase -
  ACGH52_RS37360 (ACGH52_37360) - 8324959..8326221 (-) 1263 WP_399946029.1 sulfite oxidase -

Sequence

Protein


Download         Length: 40 a.a.        Molecular weight: 4143.75 Da        Isoelectric Point: 6.0586

>NTDB_id=953954 ACGH52_RS37345 WP_079252552.1 8322463..8322585(-) (cytR) [Streptomyces sp. BBFR25]
MPGRLAVTGYDDIDAASMVSPALTTVVNPAREIGRSAARL

Nucleotide


Download         Length: 123 bp        

>NTDB_id=953954 ACGH52_RS37345 WP_079252552.1 8322463..8322585(-) (cytR) [Streptomyces sp. BBFR25]
GTGCCGGGGCGGCTGGCCGTCACCGGGTACGACGACATCGACGCGGCGTCGATGGTCTCCCCCGCGCTGACGACGGTCGT
CAACCCGGCGCGGGAGATCGGCCGTTCGGCGGCCCGGCTGTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(2-40)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

48.649

92.5

0.45
  cytR Vibrio cholerae C6706

48.649

92.5

0.45