Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACGH52_RS16670 Genome accession   NZ_CP172447
Coordinates   3696705..3697703 (-) Length   332 a.a.
NCBI ID   WP_030190975.1    Uniprot ID   A0A6B3QQG4
Organism   Streptomyces sp. BBFR25     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3691705..3702703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGH52_RS16655 (ACGH52_16655) - 3692641..3694176 (-) 1536 WP_121700584.1 MFS transporter -
  ACGH52_RS16660 (ACGH52_16660) - 3694239..3695210 (+) 972 WP_121700585.1 YafY family protein -
  ACGH52_RS16665 (ACGH52_16665) - 3695588..3696286 (-) 699 WP_399940208.1 TetR/AcrR family transcriptional regulator -
  ACGH52_RS16670 (ACGH52_16670) rpoS 3696705..3697703 (-) 999 WP_030190975.1 RNA polymerase sigma factor RpoD/SigA Regulator
  ACGH52_RS16675 (ACGH52_16675) - 3697917..3698435 (+) 519 WP_399940211.1 GNAT family N-acetyltransferase -
  ACGH52_RS16680 (ACGH52_16680) - 3698503..3699285 (-) 783 WP_210973945.1 dioxygenase -
  ACGH52_RS16685 (ACGH52_16685) - 3699384..3699875 (+) 492 WP_059301275.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACGH52_RS16690 (ACGH52_16690) - 3699983..3701530 (-) 1548 WP_399940215.1 MFS transporter -
  ACGH52_RS16695 (ACGH52_16695) - 3701735..3702388 (-) 654 WP_193777425.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37154.81 Da        Isoelectric Point: 4.9068

>NTDB_id=953906 ACGH52_RS16670 WP_030190975.1 3696705..3697703(-) (rpoS) [Streptomyces sp. BBFR25]
MATRAVARRKSATGETSGSATSVRANGGELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGYEETGAD
ATREELQALIDEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELGSTPERVTDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=953906 ACGH52_RS16670 WP_030190975.1 3696705..3697703(-) (rpoS) [Streptomyces sp. BBFR25]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCTCCGGCTCGGCAACCAGCGTCCGCGCGAACGG
CGGCGAGCTCGCCGACCGCGATCTGGTCGGCATGTACCTCGACGAGATCGCCCGGACACCGCTGCTCGACGCCGCCAAGG
AGGTCGAGCTGTCCCAGACCATCGAGGCGGGTGTGTTCGCGCGGCAGGTCCTCGAAGGGTACGAGGAGACCGGGGCGGAC
GCCACCCGCGAGGAGCTCCAGGCTTTGATCGACGAGGGCGAGCGGGCGAAGGACGTCTTCATCCGTTCCAACCTCCGCCT
GGTCGTCGCGGTCGCCCGCCGCTACCCGCGCAGCGGTCTGCCGCTCCTCGACCTGATCCAGGAGGGCAACGCCGGTCTGG
TCCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGGCAGGCCATC
ACCCGTTCCATCGCCGACCAGTCGCGCACCATCCGGCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGGCGCGT
GCAGCGCGAGTTCAACCGGGAGCACGGCCGCGAGCCGGAGCCCGCCGAGATCGCGGCCGAGCTGGGCTCGACGCCGGAGC
GCGTCACCGACGTGCTCGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTGCTGGAGGACACCTCGGCCGTGTCGCCCGAGCAGTCGGTGCTGACCCTGCTGCGCAGCGAGGAACTGGACGA
CCTCATCGGCCGCCTCGACCCGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGCACGC
TGACCGAGGTCGGCAAGGAGCACGGCCTCACCCGTGAGCGCATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTGAAG
AAGCTGGCCCGCGACACCGGCTTCGAGGCGGCCGCGTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B3QQG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.06

0.364