Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACGH52_RS12860 Genome accession   NZ_CP172447
Coordinates   2821635..2823563 (+) Length   642 a.a.
NCBI ID   WP_076974207.1    Uniprot ID   -
Organism   Streptomyces sp. BBFR25     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2816635..2828563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGH52_RS12825 (ACGH52_12825) - 2817017..2817322 (+) 306 WP_399939169.1 hypothetical protein -
  ACGH52_RS12845 (ACGH52_12845) - 2817964..2818269 (+) 306 WP_059299462.1 YtxH domain-containing protein -
  ACGH52_RS12850 (ACGH52_12850) - 2818314..2819762 (+) 1449 WP_399939172.1 FGGY-family carbohydrate kinase -
  ACGH52_RS12855 (ACGH52_12855) rcrP 2819902..2821635 (+) 1734 WP_121704666.1 ABC transporter ATP-binding protein Regulator
  ACGH52_RS12860 (ACGH52_12860) rcrQ 2821635..2823563 (+) 1929 WP_076974207.1 ABC transporter ATP-binding protein Regulator
  ACGH52_RS12865 (ACGH52_12865) - 2823573..2824745 (-) 1173 WP_374103193.1 RNA polymerase sigma factor -
  ACGH52_RS12870 (ACGH52_12870) dnaG 2824886..2826808 (-) 1923 WP_076974209.1 DNA primase -
  ACGH52_RS12875 (ACGH52_12875) - 2826852..2828117 (-) 1266 WP_121704668.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69404.73 Da        Isoelectric Point: 5.4406

>NTDB_id=953898 ACGH52_RS12860 WP_076974207.1 2821635..2823563(+) (rcrQ) [Streptomyces sp. BBFR25]
MAGPAGRMMAGGGPDQRSMDFKGSSKRLVAQFRPERATLFTLLACVVVSVGLNVVGPKILGRATDLVFAGIVGRDMPSGA
TKEQVLDSMRESGDGKVADMLRSTDFTPGQGIDFGAVGEVLLLALATFAVAGLLMAVATRLVNRAVNRTMFRLREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPQFVQQWRSTGQLNAHIEEMYTGHALVKVFGRQEESAKQFAEQNDALYEAGFKAQFNSGIMQPLMMCVSNLNYVLVA
VVGGLRVASGQLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQSADPIPGVRPEDLRGRVELE
HVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAKMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGAIVEQGAHAELLAANGAYARLYKAQFAEAVAE
VG

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=953898 ACGH52_RS12860 WP_076974207.1 2821635..2823563(+) (rcrQ) [Streptomyces sp. BBFR25]
ATGGCCGGGCCTGCGGGTCGCATGATGGCCGGGGGCGGCCCCGACCAGCGTTCGATGGACTTCAAGGGGTCGAGCAAACG
GCTCGTCGCCCAGTTCCGGCCGGAGCGGGCGACACTGTTCACGCTGCTGGCGTGCGTGGTCGTCAGCGTCGGCCTCAACG
TGGTGGGGCCGAAGATCCTCGGCCGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGGACATGCCGTCGGGTGCC
ACGAAGGAGCAGGTCCTGGACTCCATGCGCGAGAGCGGTGACGGCAAGGTCGCCGACATGCTCCGCAGCACGGACTTCAC
CCCGGGCCAGGGCATCGACTTCGGCGCGGTCGGCGAGGTGCTGCTGCTCGCGCTGGCGACGTTCGCGGTGGCCGGGCTGC
TGATGGCGGTGGCCACCCGGCTGGTGAACCGGGCGGTGAACCGGACGATGTTCCGGCTGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCTTACTTCGACAAGCGCCAGCGCGGCGAGGTGCTCAGCCGCGCCACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACCATCATCGGCGTGCTGGCGATGATGT
TCTACGTCTCCTGGATCCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCGTGGTGGCCACGCGGGTGGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGCGCTCGACGGGGCAGCTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CGCGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGAAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTGCGTGTCCAACCTGAACTACGTGCTGGTCGCG
GTGGTCGGCGGCCTGCGGGTGGCCTCGGGTCAGCTGTCCATCGGCGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCCTCCATGGCGAACCTGGTGCAGTCGGGCGTGGCGTCGGCGGAGCGGATCTTCGAGC
TGCTGGACGCCGAGGAGCAGTCGGCGGACCCGATCCCGGGCGTGCGGCCCGAGGACCTGCGCGGCCGGGTGGAGCTGGAG
CACGTGTCCTTCCGGTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGAAGGTGGAGCCGGGCCACACGGTCGC
CATCGTCGGTCCGACGGGCGCGGGCAAGACGACCCTGGTCAATCTGCTGATGCGCTTCTACGAGGTCTCCGGCGGCCGGA
TCACCCTGGACGGCGTCGACATAGCGAAGATGTCCCGGGACGAGCTGCGGGCCGGTATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCGTCGCGGGAGGTCACCCGAGGGGAGATCGAGGAGGC
CGCGCGGGCCGCGCACGCCGACCGGTTCGTACGGACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCACGG
GGGTGAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTCGACGAG
GCGACGTCGTCCGTGGACACCCGGACGGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTCGCGCACGGGCGGACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATCCTGGTGATGGAGGACGGGGCGATCGTGGAGCAAG
GGGCGCATGCGGAGCTGCTGGCCGCGAACGGCGCGTACGCGCGGTTGTACAAGGCGCAGTTCGCGGAGGCGGTGGCGGAG
GTGGGGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.894

97.04

0.407