Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACGH52_RS12855 Genome accession   NZ_CP172447
Coordinates   2819902..2821635 (+) Length   577 a.a.
NCBI ID   WP_121704666.1    Uniprot ID   -
Organism   Streptomyces sp. BBFR25     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2814902..2826635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGH52_RS12820 (ACGH52_12820) - 2815748..2815912 (+) 165 WP_210975624.1 hypothetical protein -
  ACGH52_RS12825 (ACGH52_12825) - 2817017..2817322 (+) 306 WP_399939169.1 hypothetical protein -
  ACGH52_RS12845 (ACGH52_12845) - 2817964..2818269 (+) 306 WP_059299462.1 YtxH domain-containing protein -
  ACGH52_RS12850 (ACGH52_12850) - 2818314..2819762 (+) 1449 WP_399939172.1 FGGY-family carbohydrate kinase -
  ACGH52_RS12855 (ACGH52_12855) rcrP 2819902..2821635 (+) 1734 WP_121704666.1 ABC transporter ATP-binding protein Regulator
  ACGH52_RS12860 (ACGH52_12860) rcrQ 2821635..2823563 (+) 1929 WP_076974207.1 ABC transporter ATP-binding protein Regulator
  ACGH52_RS12865 (ACGH52_12865) - 2823573..2824745 (-) 1173 WP_374103193.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62587.90 Da        Isoelectric Point: 6.3233

>NTDB_id=953897 ACGH52_RS12855 WP_121704666.1 2819902..2821635(+) (rcrP) [Streptomyces sp. BBFR25]
MLIRLLRAYLRPYKKPIALLVALQFLQTCASLYLPTLNAHIIDEGVVKGDSGYILSYGALMIGISLAQVVCNIGAVFYGA
RTAAALGRDLRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVMALGLDVPLSGV
LLGVVPVLAICVTLIVRKLRPLFRAMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANTELTEVALGTGNLLAL
MFPVVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETGSSVVP
PVAPVTELRRHGHLEIREAGFRYPGAEEPVLRNIGLVAKPGETTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVDGVDVR
TVDPKTLAKVVSLVPQKPYLFAGTVASNLRYGNPDATDEELWHALKVAQAKDFVSELEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAELAQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGVGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=953897 ACGH52_RS12855 WP_121704666.1 2819902..2821635(+) (rcrP) [Streptomyces sp. BBFR25]
GTGCTCATACGACTGCTCCGGGCCTATCTCAGGCCCTACAAGAAACCCATCGCCCTGCTGGTGGCGCTGCAGTTCCTGCA
GACCTGCGCCTCCCTGTACCTGCCGACCCTGAACGCGCACATCATCGACGAAGGCGTCGTGAAGGGGGACTCGGGCTACA
TCCTGAGCTACGGCGCCCTGATGATCGGCATCTCGCTGGCCCAGGTGGTCTGCAACATCGGTGCCGTCTTCTACGGCGCG
CGCACCGCCGCCGCCCTCGGCCGGGACCTGCGGGGTGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGCGAGGTGGG
CCACTTCGGCGCGCCCTCGCTGATCACCCGGACCACCAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTGGGCGGCATCGTGATGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGCTCGGGGTCGTGCCGGTGCTGGCGATCTGCGTCACGCTCATCGTGCGGAAGTTGCGCCCGCTGTTCCGGGCCATGCA
GGTGCGCCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGCGACG
AGTACGAGCAGCAGCGCTTCCGCAAGGCCAACACCGAGCTGACCGAGGTGGCCCTCGGCACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTCTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGGGAGCAGCGTGGTGCCG
CCGGTGGCGCCGGTCACCGAGCTGCGCCGGCACGGCCACCTGGAGATCCGGGAGGCGGGCTTCCGCTACCCCGGGGCCGA
GGAGCCGGTGCTCAGGAACATCGGCCTGGTGGCCAAGCCGGGCGAGACGACCGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCGACGCTGCTGGGCCTGGTCCCCCGCCTCTTCGACGCCACCGAGGGCGAGGTGCTGGTCGACGGGGTGGACGTGCGG
ACCGTCGACCCGAAGACGCTGGCCAAGGTGGTGAGCCTGGTGCCGCAGAAGCCGTACCTCTTCGCCGGTACCGTCGCGAG
CAATCTGCGCTACGGCAATCCGGACGCCACGGACGAGGAGCTGTGGCACGCGCTGAAGGTGGCGCAGGCCAAGGACTTCG
TCTCCGAGCTGGAGGGCGGGCTGGACGCGCCGATCGCGCAGGGCGGCACCAACGTGTCGGGCGGTCAGCGCCAGCGGCTC
GCCATCGCCCGGACGCTGGTCCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCGGCGCTGCGGGCCGAGCTGGCCCAGGAGACCGCCGAGGCGACGGTGGTGATCGTGGCGCAGCGGGTGGCGACCATCC
GGGACGCGGACCGGATCGTCGTGCTGGACGAGGGGCGGGTGGTCGGCGTGGGACGGCACCACGAACTGATGGCGGACAAC
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.964

97.574

0.39