Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACH5DO_RS11925 Genome accession   NZ_CP172432
Coordinates   2449271..2450011 (+) Length   246 a.a.
NCBI ID   WP_000216874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DG29     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2444271..2455011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH5DO_RS11900 (ACH5DO_11900) yhaM 2444690..2445631 (+) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -
  ACH5DO_RS11905 (ACH5DO_11905) - 2445752..2446714 (-) 963 WP_000782119.1 foldase protein PrsA -
  ACH5DO_RS11910 (ACH5DO_11910) - 2446919..2447476 (-) 558 WP_000477959.1 DUF3267 domain-containing protein -
  ACH5DO_RS11915 (ACH5DO_11915) - 2448208..2448573 (-) 366 WP_000648118.1 YtxH domain-containing protein -
  ACH5DO_RS11920 (ACH5DO_11920) - 2448715..2449137 (-) 423 WP_000004984.1 HIT family protein -
  ACH5DO_RS11925 (ACH5DO_11925) pptA 2449271..2450011 (+) 741 WP_000216874.1 ABC transporter ATP-binding protein EcsA Regulator
  ACH5DO_RS11930 (ACH5DO_11930) ecsB 2450004..2451227 (+) 1224 WP_001245751.1 ABC transporter permease EcsB -
  ACH5DO_RS11935 (ACH5DO_11935) traP 2451351..2451854 (-) 504 WP_114636064.1 signal transduction protein TRAP -
  ACH5DO_RS11940 (ACH5DO_11940) - 2452040..2452126 (+) 87 WP_031875110.1 hypothetical protein -
  ACH5DO_RS11945 (ACH5DO_11945) hemE 2452116..2453153 (+) 1038 WP_000233540.1 uroporphyrinogen decarboxylase -
  ACH5DO_RS11950 (ACH5DO_11950) hemH 2453210..2454133 (+) 924 WP_000162876.1 ferrochelatase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27687.02 Da        Isoelectric Point: 4.6672

>NTDB_id=953847 ACH5DO_RS11925 WP_000216874.1 2449271..2450011(+) (pptA) [Staphylococcus aureus strain DG29]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=953847 ACH5DO_RS11925 WP_000216874.1 2449271..2450011(+) (pptA) [Staphylococcus aureus strain DG29]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATCGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGACATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGTCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCGACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545