Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACHGMI_RS20845 Genome accession   NZ_CP172417
Coordinates   3829046..3829768 (-) Length   240 a.a.
NCBI ID   WP_026113628.1    Uniprot ID   -
Organism   Bacillus subtilis strain AKPS2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3824046..3834768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS20810 fliW 3824185..3824616 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  ACHGMI_RS20815 yviE 3824637..3825212 (-) 576 WP_015384781.1 DUF6470 family protein -
  ACHGMI_RS20820 flgL 3825259..3826155 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  ACHGMI_RS20825 flgK 3826166..3827689 (-) 1524 WP_041351274.1 flagellar hook-associated protein FlgK -
  ACHGMI_RS20830 flgN 3827708..3828190 (-) 483 WP_041351273.1 flagellar protein FlgN -
  ACHGMI_RS20835 flgM 3828206..3828472 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACHGMI_RS20840 yvyF 3828553..3828972 (-) 420 WP_017695307.1 TIGR03826 family flagellar region protein -
  ACHGMI_RS20845 comFC 3829046..3829768 (-) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  ACHGMI_RS20850 comFB 3829732..3830014 (-) 283 Protein_4049 late competence development ComFB family protein -
  ACHGMI_RS20855 comFA 3830066..3831457 (-) 1392 WP_017695309.1 ATP-dependent helicase ComFA Machinery gene
  ACHGMI_RS20860 fakBA 3831563..3832408 (-) 846 WP_017695310.1 DegV family protein -
  ACHGMI_RS20865 degU 3832506..3833195 (-) 690 WP_003219701.1 two-component system response regulator DegU -
  ACHGMI_RS20870 degS 3833278..3834435 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27359.77 Da        Isoelectric Point: 9.7832

>NTDB_id=953757 ACHGMI_RS20845 WP_026113628.1 3829046..3829768(-) (comFC) [Bacillus subtilis strain AKPS2]
MSNEAGGGIHKLICLLCDSQFSQDVTWIALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRG
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
GRPTHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAKGMNIILIDDLYTTGATLHFAARCLLEKGKAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=953757 ACHGMI_RS20845 WP_026113628.1 3829046..3829768(-) (comFC) [Bacillus subtilis strain AKPS2]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GATAGCCCTTTTTTTATTAAAGCCGGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTGTGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGGGGC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GGCAGGCCTACCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAAAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGGCATCTTTTACATTGATCAGAAGC
TAA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

96.667

100

0.967