Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACHGMI_RS17315 Genome accession   NZ_CP172417
Coordinates   3164378..3165088 (-) Length   236 a.a.
NCBI ID   WP_015714539.1    Uniprot ID   -
Organism   Bacillus subtilis strain AKPS2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3159378..3170088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS17295 cysK 3159430..3160365 (+) 936 WP_033880436.1 cysteine synthase A -
  ACHGMI_RS17300 pepV 3160399..3161790 (-) 1392 WP_017695481.1 dipeptidase PepV -
  ACHGMI_RS17305 pbuO 3161887..3163185 (+) 1299 WP_014480583.1 hypoxanthine/guanine permease PbuO -
  ACHGMI_RS17310 ythQ 3163224..3164381 (-) 1158 WP_413158278.1 ABC transporter permease -
  ACHGMI_RS17315 pptA 3164378..3165088 (-) 711 WP_015714539.1 ABC transporter ATP-binding protein Regulator
  ACHGMI_RS17320 ytzE 3165378..3165599 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  ACHGMI_RS17325 - 3165747..3166589 (-) 843 Protein_3374 IS3 family transposase -
  ACHGMI_RS17330 - 3166612..3166871 (+) 260 Protein_3375 IS3 family transposase -
  ACHGMI_RS17335 rsuA 3167011..3167730 (-) 720 WP_017695479.1 pseudouridine synthase -
  ACHGMI_RS17340 murJ 3167799..3169433 (-) 1635 WP_015251430.1 lipid II flippase MurJ -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26573.65 Da        Isoelectric Point: 5.5930

>NTDB_id=953742 ACHGMI_RS17315 WP_015714539.1 3164378..3165088(-) (pptA) [Bacillus subtilis strain AKPS2]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=953742 ACHGMI_RS17315 WP_015714539.1 3164378..3165088(-) (pptA) [Bacillus subtilis strain AKPS2]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTGGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTCTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGAGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432