Detailed information NTG0953728

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: ACHGMI_RS14860
• Genome accession: NZ_CP172417
• Coordinates: 2722136..2723263 (-)
• Length: 375 a.a.
• NCBI ID: WP_129093400.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain AKPS2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2717136..2728263

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHGMI_RS14850	-	2717189..2720809 (-)	3621	WP_128747171.1	DEAD/DEAH box helicase	-
ACHGMI_RS14855	-	2720736..2721647 (-)	912	WP_069487169.1	hypothetical protein	-
ACHGMI_RS14860	rapC	2722136..2723263 (-)	1128	WP_129093400.1	Rap family tetratricopeptide repeat protein	Regulator
ACHGMI_RS14865	-	2723433..2723819 (-)	387	Protein_2884	T7SS effector LXG polymorphic toxin	-
ACHGMI_RS14870	-	2723834..2725102 (+)	1269	Protein_2885	pre-toxin TG domain-containing protein	-
ACHGMI_RS14875	-	2725099..2725530 (+)	432	WP_129093401.1	SMI1/KNR4 family protein	-
ACHGMI_RS14880	yqcF	2725778..2726356 (-)	579	WP_017697458.1	type VII secretion system immunity protein YqcF	-
ACHGMI_RS14885	-	2726375..2726710 (+)	336	WP_413158233.1	immunity 50 family protein	-
ACHGMI_RS14890	-	2726720..2727160 (+)	441	WP_129093403.1	SMI1/KNR4 family protein	-
ACHGMI_RS14895	-	2727279..2727731 (-)	453	WP_017696294.1	SMI1/KNR4 family protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44269.58 Da
• Isoelectric Point: 5.8235

>NTDB_id=953728 ACHGMI_RS14860 WP_129093400.1 2722136..2723263(-) (rapC) [Bacillus subtilis strain AKPS2]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEHEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYIDFKRYEKSQPHLEKALELSRELNNKRLISSALYNLGTNFADSGDYEQAEV
FMKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLKALYVDAVDQHGVNQTI
EYLEKNKNYSYVEDIACETADAYANLKEFEISYVYHQKMVETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=953728 ACHGMI_RS14860 WP_129093400.1 2722136..2723263(-) (rapC) [Bacillus subtilis strain AKPS2]
GTGAATCCGGTTTTAAGTTCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTGGAGCACGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCCTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACAACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTGTCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATTTACTATTATAGAGAAGCTGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCATTGGATATTTATAATCAATATGAACTTTATAAGGTGCGGAAAGTTCAATGTATGTTTGTTATTTCAGG
GAATTATATAGATTTTAAACGTTATGAAAAAAGTCAGCCGCATCTTGAAAAAGCATTAGAGTTATCGAGGGAATTGAATA
ACAAGAGGTTGATTAGTTCTGCGTTATATAATTTAGGCACAAATTTTGCTGACAGTGGCGATTACGAGCAAGCGGAAGTA
TTCATGAAGCAAGCTGTGGAGATAACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAAGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGTTATTTAAAAGCTCTTTACGTCGATGCGGTGGATCAACATGGAGTTAATCAAACCATA
GAATACTTAGAGAAGAATAAGAACTATTCTTATGTTGAAGACATTGCCTGTGAGACCGCAGATGCTTATGCAAACTTAAA
AGAATTTGAAATATCTTATGTTTACCATCAGAAAATGGTTGAAACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (193-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	43.617	100	0.437
rapF	Bacillus subtilis subsp. subtilis str. 168	39.153	100	0.395