Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ACHGMI_RS11040 Genome accession   NZ_CP172417
Coordinates   2043232..2043663 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain AKPS2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2038232..2048663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS11030 hexA 2039716..2042292 (-) 2577 WP_017694903.1 DNA mismatch repair protein MutS Machinery gene
  ACHGMI_RS11035 cotE 2042425..2042970 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  ACHGMI_RS11040 ymcA 2043232..2043663 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  ACHGMI_RS11045 miaB 2043665..2045194 (-) 1530 WP_017694902.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACHGMI_RS11050 - 2045342..2046520 (-) 1179 WP_017694901.1 glycine C-acetyltransferase -
  ACHGMI_RS11055 tdh 2046533..2047576 (-) 1044 WP_017694900.1 L-threonine 3-dehydrogenase -
  ACHGMI_RS11060 spoVS 2047841..2048101 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=953700 ACHGMI_RS11040 WP_003231834.1 2043232..2043663(-) (ymcA) [Bacillus subtilis strain AKPS2]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=953700 ACHGMI_RS11040 WP_003231834.1 2043232..2043663(-) (ymcA) [Bacillus subtilis strain AKPS2]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACTTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1