Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ACHGMI_RS09185 Genome accession   NZ_CP172417
Coordinates   1681241..1681816 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   O34857
Organism   Bacillus subtilis strain AKPS2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1676241..1686816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS09145 ykvT 1677082..1677708 (-) 627 WP_014479640.1 cell wall hydrolase -
  ACHGMI_RS09150 - 1678007..1678201 (-) 195 WP_003218622.1 hypothetical protein -
  ACHGMI_RS09155 ykvS 1678366..1678551 (+) 186 WP_003232446.1 YkvS family protein -
  ACHGMI_RS09160 ykvR 1678672..1678962 (-) 291 WP_003245399.1 YkvR family protein -
  ACHGMI_RS09165 - 1679284..1679495 (-) 212 Protein_1748 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  ACHGMI_RS09170 - 1679565..1679852 (-) 288 WP_413158715.1 tyrosine-type recombinase/integrase -
  ACHGMI_RS09175 - 1679845..1680129 (-) 285 Protein_1750 transposase -
  ACHGMI_RS09180 - 1680251..1681216 (-) 966 Protein_1751 IS256-like element ISBsu2 family transposase -
  ACHGMI_RS09185 rok 1681241..1681816 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  ACHGMI_RS09190 ykuV 1682282..1682728 (-) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  ACHGMI_RS09195 ahpA 1682800..1683342 (-) 543 WP_017697282.1 biofilm-specific peroxidase AhpA -
  ACHGMI_RS09200 mscT 1683579..1684382 (+) 804 WP_017697281.1 small-conductance mechanosensitive channel protein MscT -
  ACHGMI_RS09205 ykuS 1684419..1684664 (-) 246 WP_003232382.1 YkuS family protein -
  ACHGMI_RS09210 dapI 1684726..1685850 (-) 1125 WP_017697280.1 N-acetyldiaminopimelate deacetylase -
  ACHGMI_RS09215 dapD 1685920..1686630 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=953680 ACHGMI_RS09185 WP_003232378.1 1681241..1681816(-) (rok) [Bacillus subtilis strain AKPS2]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=953680 ACHGMI_RS09185 WP_003232378.1 1681241..1681816(-) (rok) [Bacillus subtilis strain AKPS2]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCTAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5ZUX
  PDB 5ZUZ

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1