Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAA980_RS05930 Genome accession   NZ_AP028604
Coordinates   1152628..1154295 (-) Length   555 a.a.
NCBI ID   WP_054384411.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Pne3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1147628..1159295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA980_RS05905 (TKY182805_11680) - 1148767..1149069 (-) 303 WP_000590559.1 PTS sugar transporter subunit IIB -
  AAA980_RS05910 - 1149107..1149582 (-) 476 Protein_1168 PTS sugar transporter subunit IIA -
  AAA980_RS05915 (TKY182805_11700) - 1149763..1149915 (+) 153 WP_001809697.1 hypothetical protein -
  AAA980_RS05920 (TKY182805_11710) lepA 1149996..1151819 (-) 1824 WP_054384410.1 translation elongation factor 4 -
  AAA980_RS05925 (TKY182805_11720) - 1151898..1152626 (-) 729 WP_000133341.1 metallophosphoesterase family protein -
  AAA980_RS05930 (TKY182805_11730) recN 1152628..1154295 (-) 1668 WP_054384411.1 DNA repair protein RecN Machinery gene
  AAA980_RS05935 (TKY182805_11740) - 1154302..1154733 (-) 432 WP_001034415.1 arginine repressor -
  AAA980_RS05940 (TKY182805_11750) - 1154726..1155541 (-) 816 WP_054377706.1 TlyA family RNA methyltransferase -
  AAA980_RS05945 (TKY182805_11760) - 1155534..1156409 (-) 876 WP_000743819.1 polyprenyl synthetase family protein -
  AAA980_RS05950 (TKY182805_11770) - 1156406..1156618 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  AAA980_RS05955 (TKY182805_11780) xseA 1156596..1157936 (-) 1341 WP_054377707.1 exodeoxyribonuclease VII large subunit -
  AAA980_RS05960 (TKY182805_11790) udk 1158064..1158702 (-) 639 WP_001181378.1 uridine kinase -
  AAA980_RS05965 (TKY182805_11800) - 1158810..1159112 (-) 303 WP_000985089.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62830.19 Da        Isoelectric Point: 4.6273

>NTDB_id=95365 AAA980_RS05930 WP_054384411.1 1152628..1154295(-) (recN) [Streptococcus pneumoniae strain Pne3]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGASKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEEFMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLDLNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLAAARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKVSNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=95365 AAA980_RS05930 WP_054384411.1 1152628..1154295(-) (recN) [Streptococcus pneumoniae strain Pne3]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCATCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTCATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGCGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGATCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGACCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGCCAACTTGCTGCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGGT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.782

100

0.438

Multiple sequence alignment