Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACHGMI_RS05395 Genome accession   NZ_CP172417
Coordinates   999022..999738 (+) Length   238 a.a.
NCBI ID   WP_017697569.1    Uniprot ID   -
Organism   Bacillus subtilis strain AKPS2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 994022..1004738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS05365 - 994044..994181 (+) 138 WP_072557053.1 hypothetical protein -
  ACHGMI_RS05370 yflB 994200..994592 (+) 393 WP_003233692.1 DUF1992 domain-containing protein -
  ACHGMI_RS05375 - 994717..994906 (+) 190 Protein_1011 sodium:alanine symporter family protein -
  ACHGMI_RS05380 - 994902..995636 (-) 735 Protein_1012 spore germination protein -
  ACHGMI_RS05385 treP 995830..997242 (+) 1413 WP_017697567.1 PTS system trehalose-specific EIIBC component -
  ACHGMI_RS05390 treC 997313..999001 (+) 1689 WP_017697568.1 alpha,alpha-phosphotrehalase -
  ACHGMI_RS05395 treR 999022..999738 (+) 717 WP_017697569.1 trehalose operon repressor Regulator
  ACHGMI_RS05400 hypO 999878..1000543 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -
  ACHGMI_RS05405 - 1000580..1000744 (-) 165 Protein_1017 LPXTG cell wall anchor domain-containing protein -
  ACHGMI_RS05410 - 1000677..1001750 (+) 1074 WP_413158566.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27793.73 Da        Isoelectric Point: 7.5417

>NTDB_id=953647 ACHGMI_RS05395 WP_017697569.1 999022..999738(+) (treR) [Bacillus subtilis strain AKPS2]
MKVNKFITIYKDIAQQIEGGRWKAGEILPSEHELTAQYGTSRETVRKALHMHAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=953647 ACHGMI_RS05395 WP_017697569.1 999022..999738(+) (treR) [Bacillus subtilis strain AKPS2]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGGGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCACGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAACTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGGAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416