Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACHGMI_RS04935 Genome accession   NZ_CP172417
Coordinates   904108..905235 (-) Length   375 a.a.
NCBI ID   WP_017695621.1    Uniprot ID   -
Organism   Bacillus subtilis strain AKPS2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 899108..910235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS04920 dagK 901334..902245 (+) 912 WP_003233894.1 diacylglycerol kinase -
  ACHGMI_RS04925 rlmD 902302..903687 (+) 1386 WP_017695623.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  ACHGMI_RS04930 - 903921..904118 (-) 198 WP_017695622.1 hypothetical protein -
  ACHGMI_RS04935 rapC 904108..905235 (-) 1128 WP_017695621.1 Rap family tetratricopeptide repeat protein Regulator
  ACHGMI_RS04940 - 905464..905730 (-) 267 WP_017695620.1 hypothetical protein -
  ACHGMI_RS04945 - 905797..905995 (-) 199 Protein_925 hypothetical protein -
  ACHGMI_RS04950 atxF 906236..906691 (-) 456 WP_072557181.1 TIGR01741 family protein -
  ACHGMI_RS04955 yeeF 906711..908720 (-) 2010 WP_017695617.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  ACHGMI_RS04960 - 908932..909953 (+) 1022 Protein_928 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44246.89 Da        Isoelectric Point: 6.5612

>NTDB_id=953645 ACHGMI_RS04935 WP_017695621.1 904108..905235(-) (rapC) [Bacillus subtilis strain AKPS2]
MGTISSPHVGMKINEWNRHIQKFNVTDAEMLKAEIERDIDVMEEDQDLLIYYQLIGFRHQLMIDYVIPSEGNQMELSEYL
KRIEGSNRKMEKLVEYYYYFFQGMYEFKEGNFLSAITFYQKAENTIPYISDEIERAEFYFKMAEVFYHMKQTHVSMHYSS
QAYNIYKTHDLYSVRCIQCHFVIAGNYDDLESHEKALPHLEQALKGARLLESKNKRIYGQALFNIGNCYLKMGELTKAAK
YMEQSILQFKKSNFNNLTQAYHDLALIYFLQHKQDQAMDCFRKGVRFACKFDDGLFKIMFEGLQALFVKKGEASILLNVF
NKLETSQGYPYMEELALLAAKFYTEIGQMDDSVICFKKMVHARKQIQRGDCLYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=953645 ACHGMI_RS04935 WP_017695621.1 904108..905235(-) (rapC) [Bacillus subtilis strain AKPS2]
TTGGGCACGATTTCGTCTCCGCACGTTGGGATGAAAATTAATGAGTGGAACCGGCATATTCAAAAGTTTAATGTGACTGA
CGCTGAAATGCTTAAAGCTGAGATCGAGCGGGACATTGACGTCATGGAAGAAGACCAAGACCTCTTGATTTACTATCAGC
TCATTGGATTTCGCCATCAGCTTATGATTGACTATGTGATTCCATCTGAAGGAAACCAAATGGAGTTATCAGAATATTTA
AAGAGAATTGAAGGCAGCAACAGGAAGATGGAGAAGCTCGTTGAATACTACTATTACTTTTTTCAAGGAATGTATGAATT
CAAAGAGGGCAATTTCTTAAGTGCCATTACATTCTATCAAAAAGCGGAAAATACAATTCCTTATATTTCAGATGAAATCG
AGCGGGCAGAATTTTATTTTAAAATGGCTGAAGTGTTTTATCATATGAAACAAACCCATGTATCCATGCACTATTCTTCT
CAGGCGTATAACATTTATAAAACGCACGACCTTTACTCAGTCCGCTGCATACAATGCCATTTTGTGATCGCAGGAAACTA
CGATGACCTAGAAAGTCATGAAAAGGCGCTCCCTCACCTCGAACAGGCACTAAAAGGCGCACGGCTGCTTGAAAGCAAAA
ACAAGCGAATTTACGGCCAAGCTTTATTCAATATCGGAAATTGTTATCTTAAAATGGGCGAATTGACGAAAGCAGCAAAA
TACATGGAGCAATCGATACTCCAATTCAAAAAATCAAATTTCAACAACTTGACACAAGCTTACCACGATTTAGCCTTAAT
TTATTTTCTTCAACATAAACAAGACCAAGCAATGGATTGTTTCAGAAAAGGCGTACGCTTCGCATGTAAATTCGACGATG
GCCTATTTAAAATTATGTTTGAAGGATTACAGGCGCTGTTTGTCAAAAAAGGAGAAGCGTCCATTTTATTAAATGTTTTC
AACAAATTAGAGACATCCCAAGGATATCCTTATATGGAAGAGTTGGCATTATTAGCCGCAAAGTTTTATACTGAAATTGG
GCAGATGGATGATTCTGTTATCTGTTTCAAAAAGATGGTTCATGCCCGCAAACAAATTCAGAGAGGGGATTGTTTGTATG
AAATTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(3-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.421
  rapF Bacillus subtilis subsp. subtilis str. 168

39.05

100

0.395