Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ACHGMI_RS02810 Genome accession   NZ_CP172417
Coordinates   548248..548682 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain AKPS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 543248..553682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS02790 - 543392..544693 (-) 1302 Protein_508 condensation domain-containing protein -
  ACHGMI_RS02795 - 544788..545098 (+) 311 Protein_509 helix-turn-helix domain-containing protein -
  ACHGMI_RS02800 - 545141..545980 (-) 840 Protein_510 IS3 family transposase -
  ACHGMI_RS02805 topB 546000..548183 (-) 2184 WP_017697341.1 DNA topoisomerase III -
  ACHGMI_RS02810 lrpC 548248..548682 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ACHGMI_RS02815 ydzA 548867..549157 (+) 291 WP_017697340.1 DUF3817 domain-containing protein -
  ACHGMI_RS02820 amj 549202..550011 (-) 810 WP_003234394.1 lipid II flippase Amj -
  ACHGMI_RS02825 ydaG 550514..550936 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  ACHGMI_RS02830 ydaF 551014..551565 (-) 552 WP_017697339.1 GNAT family N-acetyltransferase -
  ACHGMI_RS02835 lyxE 551654..552157 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  ACHGMI_RS02840 ydaD 552173..553033 (-) 861 WP_017697338.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=953639 ACHGMI_RS02810 WP_003246585.1 548248..548682(-) (lrpC) [Bacillus subtilis strain AKPS2]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=953639 ACHGMI_RS02810 WP_003246585.1 548248..548682(-) (lrpC) [Bacillus subtilis strain AKPS2]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1