Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   WHP50_RS06515 Genome accession   NZ_CP148264
Coordinates   1271827..1272795 (+) Length   322 a.a.
NCBI ID   WP_002898677.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1322HCJ0003     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1266827..1277795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP50_RS06490 (WHP50_06490) cdsA 1267737..1268462 (-) 726 WP_002889945.1 phosphatidate cytidylyltransferase -
  WHP50_RS06495 (WHP50_06495) - 1268471..1268809 (-) 339 WP_002852397.1 hypothetical protein -
  WHP50_RS06500 (WHP50_06500) - 1268811..1270118 (-) 1308 WP_002864240.1 NFACT family protein -
  WHP50_RS06505 (WHP50_06505) mobA 1270180..1270755 (+) 576 WP_002898673.1 molybdenum cofactor guanylyltransferase -
  WHP50_RS06510 (WHP50_06510) pldA 1270752..1271741 (+) 990 WP_002898675.1 phospholipase A -
  WHP50_RS06515 (WHP50_06515) ceuB 1271827..1272795 (+) 969 WP_002898677.1 ABC transporter permease Machinery gene
  WHP50_RS06520 (WHP50_06520) ceuC 1272801..1273727 (+) 927 WP_038813980.1 iron chelate uptake ABC transporter family permease subunit -
  WHP50_RS06525 (WHP50_06525) ceuD 1273724..1274479 (+) 756 WP_002873631.1 ABC transporter ATP-binding protein -
  WHP50_RS06530 (WHP50_06530) ceuB 1274492..1275484 (+) 993 WP_002898681.1 enterochelin ABC transporter substrate-binding protein CeuB -
  WHP50_RS06540 (WHP50_06540) - 1275710..1276264 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35411.32 Da        Isoelectric Point: 9.6678

>NTDB_id=953628 WHP50_RS06515 WP_002898677.1 1271827..1272795(+) (ceuB) [Campylobacter jejuni strain Z1322HCJ0003]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDVALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=953628 WHP50_RS06515 WP_002898677.1 1271827..1272795(+) (ceuB) [Campylobacter jejuni strain Z1322HCJ0003]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGGACCATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGCGAAGATG
TAGCTTTAAATCTTGGAATTTCTTATAATGGTATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994