Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   ACHGMI_RS00365 Genome accession   NZ_CP172417
Coordinates   65561..65791 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain AKPS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 60561..70791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS00335 ridA 60725..61102 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  ACHGMI_RS00340 spoVG 61297..61590 (+) 294 WP_003218346.1 septation regulator SpoVG -
  ACHGMI_RS00345 glmU 61783..63153 (+) 1371 WP_017696375.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  ACHGMI_RS00350 prsS 63176..64129 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  ACHGMI_RS00355 rplYB 64214..64828 (+) 615 WP_017696374.1 50S ribosomal protein L25/general stress protein Ctc -
  ACHGMI_RS00360 pth 64935..65501 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  ACHGMI_RS00365 subA/fin 65561..65791 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  ACHGMI_RS00370 mfd 65861..69394 (+) 3534 WP_017696373.1 transcription-repair coupling factor -
  ACHGMI_RS00375 spoVT 69530..70066 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=953620 ACHGMI_RS00365 WP_003243417.1 65561..65791(+) (subA/fin) [Bacillus subtilis strain AKPS2]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=953620 ACHGMI_RS00365 WP_003243417.1 65561..65791(+) (subA/fin) [Bacillus subtilis strain AKPS2]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1