Detailed information NTG0953593

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACGH2B_RS16730
• Genome accession: NZ_CP172415
• Coordinates: 4133632..4134633 (+)
• Length: 333 a.a.
• NCBI ID: WP_399089662.1
• Uniprot ID: -
• Organism: Streptomyces sp. BBFR2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4128632..4139633

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACGH2B_RS16705 (ACGH2B_16705)	-	4128665..4129162 (-)	498	WP_399089647.1	MarR family winged helix-turn-helix transcriptional regulator	-
ACGH2B_RS16710 (ACGH2B_16710)	-	4129316..4130098 (+)	783	WP_399089650.1	DODA-type extradiol aromatic ring-opening family dioxygenase	-
ACGH2B_RS16715 (ACGH2B_16715)	-	4130237..4131286 (-)	1050	WP_399089653.1	questin oxidase family protein	-
ACGH2B_RS16720 (ACGH2B_16720)	-	4131909..4132412 (+)	504	WP_399089656.1	pyridoxamine 5'-phosphate oxidase family protein	-
ACGH2B_RS16725 (ACGH2B_16725)	-	4132524..4133054 (-)	531	WP_399089659.1	hypothetical protein	-
ACGH2B_RS16730 (ACGH2B_16730)	rpoS	4133632..4134633 (+)	1002	WP_399089662.1	RNA polymerase sigma factor RpoD/SigA	Regulator
ACGH2B_RS16735 (ACGH2B_16735)	-	4134836..4136164 (-)	1329	WP_399089665.1	Ig-like domain-containing protein	-
ACGH2B_RS16740 (ACGH2B_16740)	-	4136247..4137461 (-)	1215	WP_399089668.1	CaiB/BaiF CoA transferase family protein	-
ACGH2B_RS16745 (ACGH2B_16745)	-	4137753..4138058 (+)	306	WP_399089671.1	hypothetical protein	-
ACGH2B_RS16750 (ACGH2B_16750)	-	4138069..4138671 (-)	603	WP_399089673.1	YIP1 family protein	-
ACGH2B_RS16755 (ACGH2B_16755)	-	4138755..4139471 (+)	717	WP_399089676.1	VIT family protein	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 36992.54 Da
• Isoelectric Point: 4.9512

>NTDB_id=953593 ACGH2B_RS16730 WP_399089662.1 4133632..4134633(+) (rpoS) [Streptomyces sp. BBFR2]
MATRAVARRRTTSDGADRASSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYAQKILDETVTDGNAA
DASRAELEALVAEGERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEVAAELGSTPARVTDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAASPEQSVLSLLRSEELEDLIDRLDHRTASIIKARYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALVEL
KRMARDTGFDAAA

Nucleotide

• Length: 1002 bp

>NTDB_id=953593 ACGH2B_RS16730 WP_399089662.1 4133632..4134633(+) (rpoS) [Streptomyces sp. BBFR2]
ATGGCAACCCGTGCCGTCGCCCGCCGTCGGACCACCAGCGACGGTGCTGACCGGGCCAGCAGTGTTCGCGCCGTAGGCGG
GGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATAGCGCGCACGCCCCTGCTCGACGCCGCCAAGGAGG
TCGAGCTGTCCCAGACCATCGAGGCGGGCGTGTACGCGCAGAAGATCCTCGACGAGACCGTGACCGACGGCAACGCCGCG
GACGCGAGCCGTGCGGAGCTGGAGGCGCTGGTCGCGGAGGGCGAGCGGGCGAAGGACGTCTTCATCCGCTCCAACCTCCG
CCTGGTCGTCGCCGTCGCCCGCCGCTACCCGCGCGCCGGTCTGCCGCTCCTGGACCTGATCCAGGAAGGCAACGCGGGCC
TGGTGCGCGCGGTGGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCGACGTGGTGGATCCGCCAGGCG
ATCACCCGCTCCATCGCCGATCAGTCGCGCACCATCCGGCTCCCCGTCCACCTCGTCGAGGAGCTGGGCCGCATCCGCCG
CGTCCAGCGGGAGTTCAACCGCGAGAACGGCCGCGATCCGGAGCCCGCCGAGGTCGCCGCGGAGCTGGGCTCCACGCCCG
CCCGCGTCACCGACGTCCTGGACTGGGCCCGCGACCCGGTCAGCCTCAACATGTCGGTGGACGACGACGGCGACACGCAA
TTCGGTGACCTGCTGGAGGACACCTCAGCCGCCTCGCCCGAGCAGTCCGTCCTCTCCCTGCTGCGCAGCGAGGAGCTGGA
GGACCTGATCGACCGCCTCGACCACCGCACCGCCTCGATCATCAAGGCGCGCTACGGCATAGAGGACGGCCGTGAGCGCA
CCCTGACCGAGGTCGGCAAGCAGCACGGTCTGACCCGCGAGCGGATCCGCCAGATCGAGAAGCACGCCCTGGTCGAGCTG
AAGCGGATGGCCCGCGACACCGGCTTCGACGCGGCGGCCTGA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (270-321)

• Sigma-70 region 3 (Sigma70_r3) (180-256)

• Sigma-70 region 2 (Sigma70_r2) (101-170)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (33-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	39.867	90.39	0.36