Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACGH2B_RS10460 Genome accession   NZ_CP172415
Coordinates   2739829..2741730 (-) Length   633 a.a.
NCBI ID   WP_399096903.1    Uniprot ID   -
Organism   Streptomyces sp. BBFR2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2734829..2746730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGH2B_RS10440 (ACGH2B_10440) - 2735505..2736530 (-) 1026 WP_399087313.1 LacI family DNA-binding transcriptional regulator -
  ACGH2B_RS10445 (ACGH2B_10445) - 2736684..2737487 (-) 804 WP_399087315.1 response regulator transcription factor -
  ACGH2B_RS10450 (ACGH2B_10450) - 2737724..2738587 (+) 864 WP_399087317.1 alpha/beta hydrolase family protein -
  ACGH2B_RS10455 (ACGH2B_10455) - 2738611..2739750 (+) 1140 WP_399087319.1 Fic family protein -
  ACGH2B_RS10460 (ACGH2B_10460) rcrQ 2739829..2741730 (-) 1902 WP_399096903.1 ABC transporter ATP-binding protein Regulator
  ACGH2B_RS10465 (ACGH2B_10465) rcrP 2741829..2743562 (-) 1734 WP_399087321.1 ABC transporter ATP-binding protein Regulator
  ACGH2B_RS10470 (ACGH2B_10470) - 2743909..2744154 (+) 246 WP_399096906.1 MoaD/ThiS family protein -
  ACGH2B_RS10475 (ACGH2B_10475) - 2744165..2745631 (+) 1467 WP_399087323.1 hypothetical protein -
  ACGH2B_RS10480 (ACGH2B_10480) - 2745854..2746552 (+) 699 WP_399087325.1 DUF2993 domain-containing protein -

Sequence

Protein


Download         Length: 633 a.a.        Molecular weight: 67710.46 Da        Isoelectric Point: 5.2720

>NTDB_id=953580 ACGH2B_RS10460 WP_399096903.1 2739829..2741730(-) (rcrQ) [Streptomyces sp. BBFR2]
MGGPPLVKSLDFTGSGKRLLGQLRPQRAALTGALALTVASVALTVTGPRVLGHATDLLLAGLIGRDLPSGVTKAQAAEQL
RAHGQGSLADLIGTLPLVPGHGIDFPAVGTVLLYATLIYAAAALFGFLQARLVTTAVQGTVFRMREQVEGKLARLPLSYF
DKQQRGEVLSRATNDIDNIQQTLQQSLSQIVTSLLTVLGVLAMMFWINPLLAVVALATVPLSVIVATRVGKRAQPQFVKQ
WSSTGKLNGHVEEMYTGHSLVKVFGRQKESADRFREQNDALYEASFKAQAISGLIQPAMTFVGNLNYVLIAVVGGLRVAS
GALSVGDVQAFIQYSRQFSQPLAQFAALANLVQSGVASAERVFELLDAEEQTPDPEDAPAPPRTAGRVAFEDVSFRYDED
KPLIEGLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYETRSGRITLDGTDIAALDREELRSRIGMVLQDTWLFGGTIAE
NIAYGAPDGTPHEKIVEAARATHVDRFVRTLPDGYDSVVDDEGGSVSVGEKQLITIARAFLAEPAILVLDEATSSVDTRT
EVLIQQAMARLRTGRTSFVIAHRLSTIRDADLILVMESGAIVEQGDHATLLAADGAYARLYAAQFAEAVTETE

Nucleotide


Download         Length: 1902 bp        

>NTDB_id=953580 ACGH2B_RS10460 WP_399096903.1 2739829..2741730(-) (rcrQ) [Streptomyces sp. BBFR2]
ATGGGCGGCCCGCCGCTGGTGAAGTCGCTGGACTTCACCGGCTCCGGCAAGCGGCTGCTGGGCCAACTGCGGCCGCAGCG
CGCCGCGCTCACCGGCGCGCTGGCGCTGACCGTCGCGTCCGTGGCGCTGACCGTCACCGGCCCGCGTGTCCTCGGGCACG
CCACCGACCTGCTCCTCGCCGGGCTGATCGGCCGCGATCTGCCGTCCGGCGTCACCAAGGCGCAGGCCGCCGAGCAGTTG
CGCGCCCACGGGCAGGGCTCTCTCGCCGACCTCATCGGCACGCTGCCGCTCGTCCCCGGCCACGGCATCGACTTCCCCGC
CGTCGGCACCGTCCTGCTCTACGCCACGCTGATCTACGCGGCGGCGGCGCTCTTCGGCTTCCTCCAGGCGCGGCTGGTCA
CCACCGCCGTGCAGGGCACCGTCTTCCGGATGCGTGAGCAGGTCGAGGGAAAGCTGGCGCGGCTGCCGCTGAGCTACTTC
GACAAGCAGCAGCGCGGCGAGGTGCTCTCCCGCGCCACCAACGACATCGACAACATCCAGCAGACGCTCCAGCAGAGCCT
GAGCCAGATCGTCACCTCGCTGCTGACCGTCCTCGGCGTCCTCGCGATGATGTTCTGGATCAACCCGCTGCTGGCGGTGG
TCGCGCTGGCCACGGTGCCGCTGTCGGTGATCGTCGCCACCCGGGTCGGCAAGCGGGCGCAGCCGCAGTTCGTCAAACAG
TGGTCGTCCACCGGCAAGCTCAACGGCCACGTCGAGGAGATGTACACCGGCCACTCCCTGGTCAAGGTCTTCGGCCGCCA
GAAGGAGTCCGCCGACCGCTTCCGCGAGCAGAACGACGCGCTGTACGAGGCGAGCTTCAAGGCTCAGGCCATCTCCGGTC
TCATCCAGCCCGCGATGACCTTCGTCGGCAACCTCAACTATGTGCTGATCGCCGTCGTCGGCGGGCTGCGGGTCGCCTCC
GGCGCGCTCTCCGTCGGTGACGTCCAGGCGTTCATCCAGTACTCCCGGCAGTTCAGCCAGCCGCTCGCGCAGTTCGCGGC
GCTGGCCAACCTCGTCCAGTCCGGCGTCGCCTCCGCCGAGCGGGTCTTCGAACTCCTCGACGCCGAGGAGCAGACGCCCG
ACCCGGAGGACGCCCCCGCCCCGCCGCGCACCGCCGGACGCGTCGCCTTCGAGGACGTCTCGTTCCGCTACGACGAGGAC
AAGCCGCTGATCGAGGGCTTGTCGCTGACCGTCGAGCCCGGCCAGACCGTCGCCATCGTCGGCCCCACCGGCGCCGGCAA
GACCACCCTCGTCAACCTCCTCATGCGGTTCTACGAGACCCGCTCCGGCCGGATCACCCTCGACGGCACCGACATCGCCG
CCCTCGACCGCGAGGAGCTGCGCTCCCGGATCGGCATGGTCCTCCAGGACACCTGGCTCTTCGGCGGCACCATCGCCGAG
AACATCGCCTACGGCGCCCCCGACGGCACCCCGCACGAGAAGATCGTCGAGGCGGCCCGCGCCACCCACGTCGACCGTTT
CGTCCGCACCCTGCCGGACGGCTACGACAGCGTCGTGGACGACGAGGGCGGCAGCGTCTCCGTCGGCGAGAAGCAGTTGA
TCACCATCGCCCGCGCGTTCCTCGCCGAGCCCGCGATCCTCGTCCTCGACGAGGCCACCAGCTCCGTCGACACCCGCACC
GAGGTACTGATCCAGCAGGCCATGGCCCGGCTGCGCACCGGCCGCACCAGCTTCGTCATCGCCCACCGCCTGTCCACCAT
CCGCGACGCGGACCTGATCCTCGTCATGGAGTCCGGCGCCATCGTCGAACAGGGCGACCACGCCACCCTCCTCGCCGCCG
ACGGCGCCTACGCCCGCCTCTACGCGGCCCAGTTCGCCGAGGCGGTCACCGAAACGGAGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(35-342)

ABC transporter (ABC_tran)

(405-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.491

97.472

0.404