Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHQ35_RS08110 Genome accession   NZ_CP148261
Coordinates   1532850..1533167 (-) Length   105 a.a.
NCBI ID   WP_002851255.1    Uniprot ID   Q0P8E2
Organism   Campylobacter jejuni strain Z1322HCJ0013     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1527850..1538167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ35_RS08090 (WHQ35_08090) ctsE 1528719..1530278 (-) 1560 WP_338885393.1 GspE/PulE family protein Machinery gene
  WHQ35_RS08095 (WHQ35_08095) ctsX 1530268..1530855 (-) 588 WP_002851370.1 membrane protein Machinery gene
  WHQ35_RS08100 (WHQ35_08100) ctsP 1530859..1531467 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHQ35_RS08105 (WHQ35_08105) ctsD 1531460..1532878 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHQ35_RS08110 (WHQ35_08110) ctsR 1532850..1533167 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  WHQ35_RS08115 (WHQ35_08115) nifJ 1533191..1536751 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHQ35_RS08120 (WHQ35_08120) - 1536844..1537485 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=953554 WHQ35_RS08110 WP_002851255.1 1532850..1533167(-) (ctsR) [Campylobacter jejuni strain Z1322HCJ0013]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=953554 WHQ35_RS08110 WP_002851255.1 1532850..1533167(-) (ctsR) [Campylobacter jejuni strain Z1322HCJ0013]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981