Detailed information NTG0953514

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: WHQ19_RS05580
• Genome accession: NZ_CP148260
• Coordinates: 1079521..1080471 (+)
• Length: 316 a.a.
• NCBI ID: WP_002899461.1
• Uniprot ID: A0A5Z1S6J2
• Organism: Campylobacter jejuni strain Z1322HCJ0014
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1074521..1085471

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WHQ19_RS05565 (WHQ19_05565)	-	1075369..1077300 (-)	1932	WP_052785346.1	hypothetical protein	-
WHQ19_RS05570 (WHQ19_05570)	-	1077376..1078650 (+)	1275	WP_052785345.1	DUF2972 domain-containing protein	-
WHQ19_RS05575 (WHQ19_05575)	-	1078614..1079462 (-)	849	WP_002899460.1	glycosyltransferase family 2 protein	-
WHQ19_RS05580 (WHQ19_05580)	waaF	1079521..1080471 (+)	951	WP_002899461.1	lipopolysaccharide heptosyltransferase II	Regulator
WHQ19_RS05585 (WHQ19_05585)	-	1080457..1081221 (-)	765	WP_002899462.1	glycosyltransferase family 25 protein	-
WHQ19_RS05590 (WHQ19_05590)	gmhA	1081221..1081781 (-)	561	WP_002881439.1	D-sedoheptulose 7-phosphate isomerase	-
WHQ19_RS05595 (WHQ19_05595)	rfaE1	1081778..1083163 (-)	1386	WP_052785344.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
WHQ19_RS05600 (WHQ19_05600)	rfaD	1083156..1084109 (-)	954	WP_038813706.1	ADP-glyceromanno-heptose 6-epimerase	-
WHQ19_RS05605 (WHQ19_05605)	gmhB	1084110..1084670 (-)	561	WP_052794772.1	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
WHQ19_RS05610 (WHQ19_05610)	-	1084752..1085054 (+)	303	WP_002852762.1	cytochrome c	-
WHQ19_RS05615 (WHQ19_05615)	ccoS	1085077..1085283 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 316 a.a.
• Molecular weight: 36265.84 Da
• Isoelectric Point: 10.2322

>NTDB_id=953514 WHQ19_RS05580 WP_002899461.1 1079521..1080471(+) (waaF) [Campylobacter jejuni strain Z1322HCJ0014]
MKIFIHLPTWLGDAVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLGIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI

Nucleotide

• Length: 951 bp

>NTDB_id=953514 WHQ19_RS05580 WP_002899461.1 1079521..1080471(+) (waaF) [Campylobacter jejuni strain Z1322HCJ0014]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCACGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGTTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGGCATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGATAGT
GGCCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGTCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAACGAAAATGCAAAATTAGTACATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

3D structure

• AlphaFold DB: A0A5Z1S6J2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	95.541	99.367	0.949