Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   QMM10_RS04905 Genome accession   NZ_AP025938
Coordinates   961243..962052 (+) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain PZ900701057     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 956243..967052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM10_RS04885 - 957743..957868 (-) 126 WP_001818232.1 hypothetical protein -
  QMM10_RS04890 (PC1044_09600) mutY 957965..959140 (+) 1176 WP_000886145.1 A/G-specific adenine glycosylase -
  QMM10_RS04895 (PC1044_09610) micA 959195..959899 (+) 705 WP_000722076.1 response regulator YycF Regulator
  QMM10_RS04900 (PC1044_09620) micB 959892..961241 (+) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  QMM10_RS04905 (PC1044_09630) vicX 961243..962052 (+) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  QMM10_RS04910 (PC1044_09640) - 962143..962385 (+) 243 WP_000208080.1 DUF6290 family protein -
  QMM10_RS04915 (PC1044_09650) - 962387..962641 (+) 255 WP_001809704.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QMM10_RS04920 (PC1044_09660) - 962716..964587 (+) 1872 WP_000150986.1 Eco57I restriction-modification methylase domain-containing protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=95351 QMM10_RS04905 WP_001289493.1 961243..962052(+) (vicX) [Streptococcus pneumoniae strain PZ900701057]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=95351 QMM10_RS04905 WP_001289493.1 961243..962052(+) (vicX) [Streptococcus pneumoniae strain PZ900701057]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGTGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACTTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGACAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment