Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Q3A86_RS11075 Genome accession   NZ_CP172414
Coordinates   2654769..2656697 (+) Length   642 a.a.
NCBI ID   WP_224305579.1    Uniprot ID   -
Organism   Streptomyces sp. NBUA17     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2649769..2661697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3A86_RS11040 (Q3A86_11040) - 2649995..2650381 (+) 387 WP_359920064.1 DUF4190 domain-containing protein -
  Q3A86_RS11060 (Q3A86_11060) - 2651061..2651366 (+) 306 WP_031033927.1 YtxH domain-containing protein -
  Q3A86_RS11065 (Q3A86_11065) - 2651421..2652869 (+) 1449 WP_224305583.1 FGGY-family carbohydrate kinase -
  Q3A86_RS11070 (Q3A86_11070) rcrP 2653036..2654769 (+) 1734 WP_359920068.1 ABC transporter ATP-binding protein Regulator
  Q3A86_RS11075 (Q3A86_11075) rcrQ 2654769..2656697 (+) 1929 WP_224305579.1 ABC transporter ATP-binding protein Regulator
  Q3A86_RS11080 (Q3A86_11080) - 2656705..2657802 (-) 1098 WP_399138018.1 RNA polymerase sigma factor -
  Q3A86_RS11085 (Q3A86_11085) dnaG 2658107..2660020 (-) 1914 WP_224305578.1 DNA primase -
  Q3A86_RS11090 (Q3A86_11090) - 2660050..2661315 (-) 1266 WP_224305577.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69639.93 Da        Isoelectric Point: 5.5862

>NTDB_id=953497 Q3A86_RS11075 WP_224305579.1 2654769..2656697(+) (rcrQ) [Streptomyces sp. NBUA17]
MAGPAGRMMAGGGPDQRSMDFKGSVKRLLARFRPERATLFTLLACVVLSVGLNVVGPKILGRATDLVFAGIVGRDMPSGA
TKDQVLASMRERGDGDVADMLRSTDFTPGQGIDFAAVGEVLLLALATFSVAGLLMVVATRLVNRSVNRTVFRMREDVQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNMQQTLQQTMGQLINSLLTIIGVLAMMFYVSWILALVALVTVPLSYVVATRVGK
RSQPQFVQQWRSTGQLNAHIEEMYTGHSLVKVFGRQEESAKQFAEQNDALYEAGFRAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGTLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQSADPIPGARPENLRGRVELE
HVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGADIAKMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASRDVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLVTIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGAIVEQGAHAELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=953497 Q3A86_RS11075 WP_224305579.1 2654769..2656697(+) (rcrQ) [Streptomyces sp. NBUA17]
ATGGCGGGGCCTGCGGGTCGCATGATGGCCGGGGGCGGTCCCGACCAGCGGTCGATGGACTTCAAGGGGTCGGTCAAACG
GCTCCTCGCCCGGTTCCGGCCGGAACGGGCGACGCTGTTCACGCTGCTGGCGTGCGTCGTCCTCAGCGTCGGCCTCAACG
TGGTCGGGCCGAAGATCCTCGGCCGCGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGGACATGCCGTCCGGCGCC
ACGAAGGACCAGGTCCTCGCGTCCATGCGCGAGCGCGGTGACGGCGACGTGGCCGACATGCTCCGCAGCACGGACTTCAC
ACCGGGGCAGGGCATCGACTTCGCCGCCGTCGGCGAGGTGCTGCTGCTCGCGCTGGCGACGTTCTCGGTGGCGGGGCTGC
TGATGGTGGTGGCGACGCGGCTGGTGAACCGGTCGGTCAACCGGACGGTGTTCCGGATGCGCGAGGACGTGCAGGCGAAA
CTGTCGAGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGCGAGGTGCTGTCCCGGGCGACCAACGACATCGACAA
CATGCAGCAGACGCTCCAGCAGACGATGGGCCAGCTGATCAACTCGCTGCTGACCATCATCGGCGTGCTGGCGATGATGT
TCTACGTCTCGTGGATCCTCGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTACGTGGTGGCCACGCGGGTGGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGCGCTCGACGGGGCAGCTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CTCGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGAAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCGG
GGTTCAGGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGGTCGCG
GTGGTCGGCGGCCTGCGGGTGGCCTCGGGCACGCTGTCCATCGGCGACGTGCAGGCCTTCGTCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCGTCGGCGGAGCGGATCTTCGAGC
TGCTCGACGCCGAGGAGCAGTCGGCGGACCCGATCCCGGGCGCCCGGCCGGAGAACCTGCGCGGGCGGGTGGAGCTGGAG
CACGTCTCCTTCCGCTACGACCCCGAGAAGCCGCTGATCGAGGACCTGTCGCTGAAGGTCGAGCCGGGCCACACGGTCGC
CATCGTCGGCCCGACCGGCGCCGGCAAGACGACCCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCTCCGGCGGCCGGA
TCACGCTGGACGGCGCCGACATCGCGAAGATGTCCCGGGACGAGCTGCGGGCCGGCATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCGTCCCGCGACGTCACCCGCGGGGAGATCGAGGAGGC
CGCGCGGGCCGCGCACGCCGACCGGTTCGTACGGACGCTGCCCGACGGCTACGACACCGTGATCGACGACGAGGGCACGG
GGGTGAGCGCGGGCGAGAAGCAGCTCGTCACCATCGCACGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAG
GCGACGTCGTCCGTGGACACGCGGACGGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTCGCGCACGGGCGGACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATCCTCGTGATGGAGGACGGGGCGATCGTGGAGCAGG
GTGCGCACGCGGAGCTGCTGGCCGCGGACGGGGCGTACGCGCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCCGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(40-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.034

96.417

0.396