Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   Q3A86_RS11070 Genome accession   NZ_CP172414
Coordinates   2653036..2654769 (+) Length   577 a.a.
NCBI ID   WP_359920068.1    Uniprot ID   -
Organism   Streptomyces sp. NBUA17     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2648036..2659769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3A86_RS11030 (Q3A86_11030) - 2648393..2649397 (+) 1005 WP_359920061.1 mannose-binding protein -
  Q3A86_RS11035 (Q3A86_11035) - 2649490..2649645 (-) 156 WP_107060505.1 DUF6131 family protein -
  Q3A86_RS11040 (Q3A86_11040) - 2649995..2650381 (+) 387 WP_359920064.1 DUF4190 domain-containing protein -
  Q3A86_RS11060 (Q3A86_11060) - 2651061..2651366 (+) 306 WP_031033927.1 YtxH domain-containing protein -
  Q3A86_RS11065 (Q3A86_11065) - 2651421..2652869 (+) 1449 WP_224305583.1 FGGY-family carbohydrate kinase -
  Q3A86_RS11070 (Q3A86_11070) rcrP 2653036..2654769 (+) 1734 WP_359920068.1 ABC transporter ATP-binding protein Regulator
  Q3A86_RS11075 (Q3A86_11075) rcrQ 2654769..2656697 (+) 1929 WP_224305579.1 ABC transporter ATP-binding protein Regulator
  Q3A86_RS11080 (Q3A86_11080) - 2656705..2657802 (-) 1098 WP_399138018.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62268.40 Da        Isoelectric Point: 6.8416

>NTDB_id=953496 Q3A86_RS11070 WP_359920068.1 2653036..2654769(+) (rcrP) [Streptomyces sp. NBUA17]
MLIRLLRTYLRPYKRPIALLVALQLLQTCASLYLPTLNAGIIDDGVVKGDSGYILSHGALMIGISLAQVVCNIGAVYYGA
RTAAALGRDVRGAVFDRVQSFSAREVGEFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMSVGGVVMALGLDVPLSGV
LLGVVPVLAVCVTLIVRRLRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANTELTEVALGTGNLLAL
MFPVVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTESSVVP
PAAPVTRLRRHGHLEIRGAGFRYPGAEEPVLRNIDLVAKPGETTAVIGSTGSGKSSLLGLVPRLFDATDGQVLVDGVDVR
TVDPKTLAKVVSLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVAGLEGGLDAPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAGLGRETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGVGGHHELMAEN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=953496 Q3A86_RS11070 WP_359920068.1 2653036..2654769(+) (rcrP) [Streptomyces sp. NBUA17]
GTGCTCATACGACTACTGCGGACCTATCTCAGGCCCTACAAGAGACCCATCGCCCTGCTGGTGGCGCTGCAGCTCCTGCA
GACCTGCGCCTCCCTCTACCTGCCGACGCTGAACGCGGGCATCATCGACGACGGTGTCGTGAAGGGTGACTCGGGTTACA
TCCTGAGCCACGGCGCCCTGATGATCGGCATCTCGCTGGCCCAGGTGGTCTGCAACATCGGCGCCGTCTACTACGGCGCG
CGCACCGCGGCCGCCCTGGGCCGGGACGTGCGGGGCGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGCGAGGTCGG
CGAGTTCGGCGCGCCCTCCCTGATCACGCGGACGACGAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTCCGTCGGCGGCGTCGTGATGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGCTCGGGGTCGTGCCGGTCCTCGCGGTCTGCGTGACGCTGATCGTGCGGCGGCTGCGCCCGCTGTTCCGGAAGATGCA
GGTGCGCCTCGACACGGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGGGCCTTCGTGCGCGACG
AGTACGAGCAGCAGCGCTTCCGGAAGGCCAACACCGAGCTGACCGAGGTGGCCCTCGGCACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGGGACCGAGAGCAGCGTGGTGCCG
CCGGCGGCGCCGGTGACGCGGCTGCGCCGGCACGGGCATCTGGAGATCCGGGGGGCGGGCTTCCGCTATCCGGGGGCCGA
GGAGCCGGTGCTCAGGAACATCGACCTCGTGGCGAAGCCGGGCGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCCAGCCTCCTCGGCCTGGTGCCCCGGCTCTTCGACGCCACCGACGGCCAGGTGCTGGTCGACGGGGTGGACGTGCGG
ACCGTCGATCCGAAGACGCTGGCCAAGGTCGTGAGCCTGGTGCCGCAGAAGCCGTACCTCTTCGCGGGGACCGTCGCGAC
GAACCTGCGTTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TCGCCGGGCTGGAGGGCGGCCTCGACGCGCCGGTCGCGCAGGGCGGCACGAACGTGTCGGGCGGTCAGCGCCAGCGGCTC
GCGATCGCGCGGACGCTGGTCCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCGGCGCTGCGGGCCGGGCTGGGCCGGGAGACGGCCGAGGCGACCGTGGTGATCGTCGCGCAGCGGGTGTCGACGATCC
GGGACGCGGACCGGATCGTCGTGCTGGACGAGGGGCGGGTGGTCGGCGTGGGCGGGCACCACGAGCTGATGGCGGAGAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.076

97.574

0.381