Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   ACHZDB_RS14765 Genome accession   NZ_CP172405
Coordinates   3215302..3218682 (+) Length   1126 a.a.
NCBI ID   WP_399425161.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB503     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 3210302..3223682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZDB_RS14740 (ACHZDB_14740) sucC 3210395..3211561 (+) 1167 WP_005426700.1 ADP-forming succinate--CoA ligase subunit beta -
  ACHZDB_RS14745 (ACHZDB_14745) sucD 3211561..3212433 (+) 873 WP_399424359.1 succinate--CoA ligase subunit alpha -
  ACHZDB_RS14750 (ACHZDB_14750) znuB 3212563..3213348 (-) 786 WP_399424361.1 zinc ABC transporter permease subunit ZnuB -
  ACHZDB_RS14755 (ACHZDB_14755) znuC 3213341..3214129 (-) 789 WP_038892101.1 zinc ABC transporter ATP-binding protein ZnuC -
  ACHZDB_RS14760 (ACHZDB_14760) znuA 3214208..3215089 (+) 882 WP_038892099.1 zinc ABC transporter substrate-binding protein ZnuA -
  ACHZDB_RS14765 (ACHZDB_14765) tfoS 3215302..3218682 (+) 3381 WP_399425161.1 AraC family transcriptional regulator Regulator
  ACHZDB_RS14770 (ACHZDB_14770) - 3219475..3219702 (+) 228 WP_005426705.1 FeoA family protein -
  ACHZDB_RS14775 (ACHZDB_14775) feoB 3219702..3221978 (+) 2277 WP_050909024.1 Fe(2+) transporter permease subunit FeoB -
  ACHZDB_RS14780 (ACHZDB_14780) - 3221975..3222205 (+) 231 WP_005426709.1 FeoC-like transcriptional regulator -
  ACHZDB_RS14785 (ACHZDB_14785) - 3222315..3222836 (-) 522 WP_077201011.1 YqhA family protein -
  ACHZDB_RS14790 (ACHZDB_14790) - 3222986..3223414 (-) 429 WP_005382194.1 HIT domain-containing protein -

Sequence

Protein


Download         Length: 1126 a.a.        Molecular weight: 126929.27 Da        Isoelectric Point: 5.9549

>NTDB_id=953467 ACHZDB_RS14765 WP_399425161.1 3215302..3218682(+) (tfoS) [Vibrio campbellii strain LB503]
MLRQIALFFGAFILSFQAIASSEANAIFYPLPNQVKGTFIAAKKLFPGEQGGLWIHDVHGRVLFYDGQTTLPKSGSFLRN
KVEQLAYHKGSFWTFIENEVYQTYPNQERRLVFSLNPGSQIRKIGSSGNYIWVSDGAQFYTYNVETSELNSFSLLQLYQH
SNNSYVYINDAIFVETKWALATTSGVYLSEGSKFNHVVSSGKNYIEKVYYSHTRREILVGTLKGALIFNIYEPGKPVIRI
GASHVLTFAETNQEYWVGTEQGLYLYSFLTGEVTQVTPASFLELELASTKIYSLLNDNMGGMWIATNQGIRYYSLFSKKF
ERITFSSYDQQMLSGRIRQTLTGPDGALWFADDHKLYRSNNGSITDVLNVSSQINEFAFQGERLWVATSTGLEIYSLKNL
QQMTFPYLQVIAGKAIDHITADGPNRLWISSGYQLFNIDAVNQTMRNFGSEWLVSKFLPAKITRLYDKEELLLIGTDHGV
YEYDGERIRFNHFSEKYGESLDIITANDGSQWFASAYGVFRTVPGSNEKQVMEMSVANSRPACLLSDSEGVWLASSVGLS
YYHLSGQLMKHYSSSSGLINNEFLPGICNVIRRAEDSDRQLIFGSQYGLVKADSSKLLVSNTPESKLIVSQVMLENEVVQ
VGSADLEEMKLPYGSSLSFLFGVMPKPDNQNLYYRLNESEKWQTLEGGQLTLEHLNSGDYHLQVSNDLQLASGLIGLDSR
FTVLKPWYLSQLAISGFTLAVIAVLALLMYWRSRYVLQANRDLAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKSSIDSIANKLPIDVDSATQDHLSKTYWQLNELKSAPEDTSSGSQNYNLSQITQSVVDVWREDFSKAGINVELQ
DEQKASRISLESFNLDVIFNSIFANIIKRSFRGQLVKLTLEEGNDIVSLSFIDHGTQLPSKASTIRPTSTNNVDLSMDNL
PQLVAASGGHLSMFTSDAQNKIEISWPCAQEPSHVEEALPEFAQTQQPQQEEMSPEQEWLMKVYQLVAEHYHDPEFGTAS
AAKMLFMSERSLQRRFKSASSRTLKDYVTEVRLETACEQLLAGEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMTQ
ESQTSL

Nucleotide


Download         Length: 3381 bp        

>NTDB_id=953467 ACHZDB_RS14765 WP_399425161.1 3215302..3218682(+) (tfoS) [Vibrio campbellii strain LB503]
TTGCTGCGCCAAATAGCCCTATTTTTTGGGGCTTTTATCCTCTCATTTCAAGCAATTGCTTCAAGTGAAGCGAATGCGAT
CTTTTACCCTTTGCCGAATCAGGTTAAGGGCACTTTCATTGCAGCGAAAAAATTGTTCCCCGGTGAACAAGGTGGGCTCT
GGATCCATGATGTTCATGGTCGTGTTCTGTTCTATGATGGTCAAACCACACTGCCAAAATCCGGTAGCTTCCTCAGAAAC
AAAGTAGAGCAGTTGGCTTACCACAAAGGTTCATTTTGGACATTTATTGAAAACGAGGTGTATCAAACTTATCCGAACCA
AGAGCGCCGTTTAGTCTTTAGCCTCAACCCTGGCTCTCAGATCCGTAAGATTGGCTCATCCGGGAACTATATTTGGGTCA
GTGATGGTGCGCAGTTCTATACCTATAATGTTGAAACCAGCGAACTGAACTCCTTTTCTCTATTACAGCTCTATCAGCAT
AGCAACAACAGTTACGTCTATATTAATGACGCTATCTTTGTCGAAACCAAGTGGGCATTGGCGACAACTTCAGGCGTATA
CCTATCAGAAGGCAGCAAGTTTAATCATGTTGTCTCATCGGGCAAAAATTACATTGAGAAAGTGTATTACTCCCATACTC
GTCGTGAAATCTTAGTCGGTACTTTAAAAGGCGCGTTGATATTTAATATCTATGAGCCCGGCAAGCCTGTTATTAGAATC
GGCGCTTCTCATGTCTTAACCTTTGCTGAAACCAATCAAGAATACTGGGTAGGGACAGAGCAAGGTCTTTATTTGTATTC
CTTCTTAACTGGCGAAGTAACCCAAGTGACACCAGCAAGTTTTCTGGAACTAGAGCTCGCCAGTACCAAAATTTACTCGT
TGCTGAACGATAATATGGGGGGAATGTGGATTGCCACCAACCAAGGCATTCGCTATTACTCTCTGTTTAGTAAAAAGTTT
GAGCGAATCACGTTCAGCAGTTATGACCAACAAATGCTCTCTGGTCGTATTCGGCAGACGCTTACCGGACCCGATGGTGC
ACTTTGGTTTGCGGACGATCATAAGTTGTATCGCTCGAATAATGGCAGCATTACCGATGTGTTGAATGTGTCGTCACAAA
TTAACGAATTTGCTTTTCAGGGAGAGAGGCTCTGGGTTGCCACGTCCACGGGTTTGGAAATATATAGCCTGAAAAACTTA
CAGCAGATGACATTCCCTTACCTCCAAGTTATCGCAGGCAAGGCAATCGACCATATTACCGCTGATGGCCCCAATCGCCT
TTGGATATCCAGTGGTTATCAGCTATTTAATATTGATGCTGTTAACCAGACTATGAGAAATTTTGGCAGCGAATGGTTAG
TGAGTAAGTTCTTACCCGCGAAGATTACGCGTCTGTACGACAAGGAAGAGTTGCTGCTGATAGGGACTGACCACGGCGTT
TACGAGTATGACGGAGAGCGAATTCGCTTTAACCATTTTTCAGAAAAGTACGGTGAATCACTCGATATTATTACCGCAAA
TGATGGCTCGCAGTGGTTTGCTTCCGCCTATGGCGTTTTCAGAACCGTTCCGGGCAGCAATGAAAAACAAGTGATGGAGA
TGAGTGTCGCAAACTCTCGCCCAGCTTGTTTGCTTAGTGATTCGGAAGGGGTGTGGCTTGCTTCTTCTGTTGGCTTAAGT
TACTACCATTTATCTGGACAGCTCATGAAGCATTACTCTTCTTCATCGGGCCTTATCAATAATGAATTCTTACCAGGCAT
TTGTAACGTTATCCGTCGTGCTGAAGATAGTGATCGCCAACTTATCTTTGGCTCTCAGTATGGGTTAGTTAAAGCTGACT
CGTCTAAATTGCTGGTTTCTAACACGCCAGAATCTAAGCTTATTGTTAGCCAAGTCATGCTGGAAAATGAAGTGGTGCAA
GTGGGTAGTGCCGACTTAGAAGAGATGAAGCTGCCTTATGGGTCGTCCCTTAGTTTCCTTTTTGGTGTGATGCCCAAGCC
TGACAATCAGAATTTGTATTATCGCTTAAATGAAAGTGAAAAATGGCAAACGTTAGAAGGTGGGCAATTAACGTTAGAAC
ACCTTAACTCTGGCGATTACCACTTACAGGTTAGTAATGACTTACAACTGGCTTCGGGTCTGATTGGATTAGATTCCAGA
TTTACAGTCCTTAAACCATGGTATCTATCGCAGTTGGCCATATCGGGTTTTACCTTGGCTGTTATTGCGGTTCTTGCCCT
TCTAATGTACTGGCGCTCACGCTATGTGCTGCAAGCTAACCGAGATCTGGCAGCTCAAGTTACGTTAAAAACCAACCAGC
TGCGCCATCAAAGTCGAGTGTTGTTGACCAGTAACCAACAATTGAGAAAGCAGATTCAGGTAAGAAACCTGCTGGTGGAT
CATGTTGCTCAATCGATAAAGTCGAGTATTGATTCGATCGCGAACAAGCTTCCTATTGATGTGGATTCGGCAACTCAAGA
CCATTTATCCAAGACCTACTGGCAATTGAACGAGCTTAAAAGTGCTCCTGAAGACACCAGCAGCGGCAGTCAAAATTACA
ACTTAAGTCAGATAACCCAATCGGTGGTGGATGTTTGGCGCGAGGACTTTTCAAAAGCAGGCATTAATGTCGAACTGCAA
GATGAGCAAAAGGCGAGCCGTATTTCATTAGAGAGCTTTAACCTCGATGTCATCTTTAACAGCATCTTTGCCAACATCAT
CAAGCGCTCGTTCCGGGGGCAGTTGGTTAAATTAACACTGGAAGAGGGCAATGATATTGTCTCGCTGAGCTTCATTGACC
ATGGTACTCAGTTGCCAAGTAAAGCATCGACAATACGCCCAACGAGCACCAACAATGTTGACTTAAGTATGGATAACCTG
CCTCAATTAGTTGCAGCCAGTGGCGGCCATTTATCGATGTTCACTTCTGATGCTCAAAATAAAATAGAGATTTCGTGGCC
ATGTGCTCAAGAGCCAAGCCATGTTGAGGAGGCGCTTCCTGAGTTTGCTCAGACACAGCAACCTCAACAAGAAGAGATGT
CGCCTGAGCAAGAGTGGTTAATGAAAGTGTATCAGTTAGTGGCTGAGCACTACCACGACCCAGAGTTTGGTACGGCATCT
GCCGCTAAGATGTTGTTTATGTCTGAGCGAAGCTTGCAGAGACGATTTAAGTCGGCGTCGTCCAGAACACTAAAAGATTA
TGTAACGGAAGTCAGGTTGGAGACCGCATGTGAGCAGTTGCTAGCTGGTGAGAAGATCAGTGAAGTTGCCTTCAACTGTG
GCTTCAATGACCCATCCTACTTTAGCCAGAAGTTTAAATTACACTTTGGGTTACCGCCGTCTAAGTTCGCGATGACACAA
GAGAGCCAAACAAGCCTATAG

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1042-1116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.574

100

0.396