Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   WHQ05_RS06695 Genome accession   NZ_CP148258
Coordinates   1299295..1300263 (+) Length   322 a.a.
NCBI ID   WP_338878206.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1322HCJ0018     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1294295..1305263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ05_RS06670 (WHQ05_06670) cdsA 1295205..1295930 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  WHQ05_RS06675 (WHQ05_06675) - 1295939..1296277 (-) 339 WP_002852397.1 hypothetical protein -
  WHQ05_RS06680 (WHQ05_06680) - 1296279..1297586 (-) 1308 WP_002868460.1 NFACT family protein -
  WHQ05_RS06685 (WHQ05_06685) mobA 1297648..1298223 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  WHQ05_RS06690 (WHQ05_06690) pldA 1298220..1299209 (+) 990 WP_002868461.1 phospholipase A -
  WHQ05_RS06695 (WHQ05_06695) ceuB 1299295..1300263 (+) 969 WP_338878206.1 ABC transporter permease Machinery gene
  WHQ05_RS06700 (WHQ05_06700) ceuC 1300256..1301194 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  WHQ05_RS06705 (WHQ05_06705) ceuD 1301191..1301946 (+) 756 WP_002867308.1 ABC transporter ATP-binding protein -
  WHQ05_RS06710 (WHQ05_06710) ceuB 1301959..1302951 (+) 993 WP_002859640.1 enterochelin ABC transporter substrate-binding protein CeuB -
  WHQ05_RS06720 (WHQ05_06720) - 1303177..1303731 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35539.49 Da        Isoelectric Point: 9.4981

>NTDB_id=953464 WHQ05_RS06695 WP_338878206.1 1299295..1300263(+) (ceuB) [Campylobacter jejuni strain Z1322HCJ0018]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTIAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVEIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=953464 WHQ05_RS06695 WP_338878206.1 1299295..1300263(+) (ceuB) [Campylobacter jejuni strain Z1322HCJ0018]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTATAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAAGGAAATTATGAATT
ACTTTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGAAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.758

100

0.988