Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHQ25_RS07475 Genome accession   NZ_CP148254
Coordinates   1454275..1454586 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain Z1323CCJ0004     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1449275..1459586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ25_RS07455 (WHQ25_07455) ctsE 1450144..1451703 (-) 1560 WP_002867246.1 GspE/PulE family protein Machinery gene
  WHQ25_RS07460 (WHQ25_07460) ctsX 1451693..1452280 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  WHQ25_RS07465 (WHQ25_07465) ctsP 1452284..1452892 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHQ25_RS07470 (WHQ25_07470) ctsD 1452885..1454297 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHQ25_RS07475 (WHQ25_07475) ctsR 1454275..1454586 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  WHQ25_RS07480 (WHQ25_07480) nifJ 1454610..1458170 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHQ25_RS07485 (WHQ25_07485) - 1458263..1458904 (-) 642 WP_002867242.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=953445 WHQ25_RS07475 WP_002855438.1 1454275..1454586(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0004]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=953445 WHQ25_RS07475 WP_002855438.1 1454275..1454586(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0004]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1