Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   WHQ25_RS05940 Genome accession   NZ_CP148254
Coordinates   1140475..1141425 (+) Length   316 a.a.
NCBI ID   WP_011049891.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0004     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1126522..1154411 1140475..1141425 within 0


Gene organization within MGE regions


Location: 1126522..1154411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ25_RS05870 (WHQ25_05870) pglI 1126522..1127451 (-) 930 WP_002867212.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  WHQ25_RS05875 (WHQ25_05875) pglH 1127444..1128523 (-) 1080 WP_002859237.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  WHQ25_RS05880 (WHQ25_05880) pglK 1128520..1130214 (-) 1695 WP_002867213.1 ABC-type lipopolysaccharide transporter PglK -
  WHQ25_RS05885 (WHQ25_05885) galE 1130208..1131194 (-) 987 WP_002867214.1 UDP-glucose 4-epimerase GalE -
  WHQ25_RS05890 (WHQ25_05890) - 1131253..1132047 (-) 795 WP_002860221.1 3'-5' exonuclease -
  WHQ25_RS05895 (WHQ25_05895) waaC 1132114..1133142 (+) 1029 WP_002859241.1 lipopolysaccharide heptosyltransferase I -
  WHQ25_RS05900 (WHQ25_05900) htrB 1133132..1134019 (+) 888 WP_002867215.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  WHQ25_RS05905 (WHQ25_05905) - 1134016..1135566 (+) 1551 WP_002867216.1 glycosyltransferase -
  WHQ25_RS05910 (WHQ25_05910) - 1135535..1136422 (-) 888 WP_011049886.1 glycosyltransferase family 2 protein -
  WHQ25_RS05915 (WHQ25_05915) - 1136415..1137623 (-) 1209 WP_011049887.1 glycosyltransferase family 2 protein -
  WHQ25_RS05920 (WHQ25_05920) - 1137701..1138363 (-) 663 WP_139889607.1 glycosyltransferase family 2 protein -
  WHQ25_RS05925 (WHQ25_05925) - 1138398..1138673 (-) 276 WP_269902324.1 glycosyltransferase family 2 protein -
  WHQ25_RS05930 (WHQ25_05930) - 1138666..1139553 (-) 888 WP_011049889.1 glycosyltransferase -
  WHQ25_RS05935 (WHQ25_05935) waaV 1139607..1140416 (-) 810 WP_011049890.1 glycosyltransferase family 2 protein -
  WHQ25_RS05940 (WHQ25_05940) waaF 1140475..1141425 (+) 951 WP_011049891.1 lipopolysaccharide heptosyltransferase II Regulator
  WHQ25_RS05945 (WHQ25_05945) - 1141411..1142175 (-) 765 WP_002884483.1 glycosyltransferase family 25 protein -
  WHQ25_RS05950 (WHQ25_05950) gmhA 1142175..1142735 (-) 561 WP_002869619.1 D-sedoheptulose 7-phosphate isomerase -
  WHQ25_RS05955 (WHQ25_05955) rfaE1 1142732..1144117 (-) 1386 WP_002867399.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  WHQ25_RS05960 (WHQ25_05960) rfaD 1144110..1145063 (-) 954 WP_002867398.1 ADP-glyceromanno-heptose 6-epimerase -
  WHQ25_RS05965 (WHQ25_05965) gmhB 1145064..1145625 (-) 562 Protein_1155 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  WHQ25_RS05970 (WHQ25_05970) - 1145706..1146008 (+) 303 WP_002852762.1 cytochrome c -
  WHQ25_RS05975 (WHQ25_05975) ccoS 1146031..1146237 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  WHQ25_RS05980 (WHQ25_05980) - 1146234..1148591 (-) 2358 WP_079254352.1 heavy metal translocating P-type ATPase -
  WHQ25_RS05985 (WHQ25_05985) rho 1148700..1149998 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  WHQ25_RS05990 (WHQ25_05990) dnaX 1150002..1151531 (+) 1530 WP_002867395.1 DNA polymerase III subunit gamma/tau -
  WHQ25_RS05995 (WHQ25_05995) - 1151528..1152046 (-) 519 Protein_1161 DUF2165 family protein -
  WHQ25_RS06000 (WHQ25_06000) copA 1152118..1154217 (-) 2100 WP_063668033.1 copper-translocating P-type ATPase CopA -
  WHQ25_RS06005 (WHQ25_06005) - 1154217..1154411 (-) 195 WP_002852760.1 cation transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36213.76 Da        Isoelectric Point: 10.2878

>NTDB_id=953433 WHQ25_RS05940 WP_011049891.1 1140475..1141425(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0004]
MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLHIKAHLKDLKLPFKLKFQSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLNLACMPCMQKTCPLKHHKCMKDLKPEVIVKAIQNLTNI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=953433 WHQ25_RS05940 WP_011049891.1 1140475..1141425(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0004]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGTTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTCACATAAAAGCTCACCTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAATCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGCCCTATGCACATAAGTGCAGTTTACAAGGTAAAAACCGTGGCTATTTTTGGCCCTACAAAATTTACTCAAACCTCACC
TTGGCAAAATGAAAACGCAACATTAGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAGTGATTGTAAAAGCGATTCAAAATTTAACTAATATCTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.652

99.051

0.918