Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   WHP52_RS07125 Genome accession   NZ_CP148252
Coordinates   1362220..1362522 (+) Length   100 a.a.
NCBI ID   WP_002877750.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0007     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1357220..1367522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP52_RS07100 (WHP52_07100) rpsR 1357582..1357842 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  WHP52_RS07105 (WHP52_07105) lon 1357903..1360278 (-) 2376 WP_002868636.1 endopeptidase La -
  WHP52_RS07110 (WHP52_07110) - 1360295..1360942 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  WHP52_RS07115 (WHP52_07115) fliW 1361103..1361492 (+) 390 WP_002877749.1 flagellar assembly protein FliW -
  WHP52_RS07120 (WHP52_07120) proC 1361492..1362223 (+) 732 WP_002855729.1 pyrroline-5-carboxylate reductase Machinery gene
  WHP52_RS07125 (WHP52_07125) ctsT 1362220..1362522 (+) 303 WP_002877750.1 hypothetical protein Machinery gene
  WHP52_RS07130 (WHP52_07130) - 1362519..1363181 (+) 663 WP_002877751.1 hypothetical protein -
  WHP52_RS07135 (WHP52_07135) - 1363178..1363630 (+) 453 WP_002877757.1 hypothetical protein -
  WHP52_RS07140 (WHP52_07140) hemD 1363627..1364256 (-) 630 WP_002877758.1 uroporphyrinogen-III synthase -
  WHP52_RS07145 (WHP52_07145) thiE 1364234..1364866 (-) 633 WP_002877759.1 thiamine phosphate synthase -
  WHP52_RS07150 (WHP52_07150) thiD 1364856..1365668 (-) 813 WP_002877760.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  WHP52_RS07155 (WHP52_07155) - 1365665..1366351 (-) 687 WP_002877763.1 endonuclease III domain-containing protein -
  WHP52_RS07160 (WHP52_07160) - 1366348..1367109 (-) 762 WP_002856328.1 ATP-binding protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 12138.20 Da        Isoelectric Point: 7.0039

>NTDB_id=953414 WHP52_RS07125 WP_002877750.1 1362220..1362522(+) (ctsT) [Campylobacter jejuni strain Z1323CCJ0007]
MKKAFILIESISAITIISLIFIGIFYHYTQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFINDG
IFQFQKLYFQDQNYSVYFKE

Nucleotide


Download         Length: 303 bp        

>NTDB_id=953414 WHP52_RS07125 WP_002877750.1 1362220..1362522(+) (ctsT) [Campylobacter jejuni strain Z1323CCJ0007]
ATGAAAAAGGCTTTCATACTTATAGAAAGTATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATCA
CTATACTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTATTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGTGTTTATTTTAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

98

100

0.98