Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   WHP52_RS00585 Genome accession   NZ_CP148252
Coordinates   119117..119725 (-) Length   202 a.a.
NCBI ID   WP_002862129.1    Uniprot ID   A0A1S2U519
Organism   Campylobacter jejuni strain Z1323CCJ0007     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 114117..124725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP52_RS00560 (WHP52_00560) - 114274..115038 (+) 765 WP_002877433.1 TIGR02757 family protein -
  WHP52_RS00565 (WHP52_00565) - 115042..115806 (+) 765 WP_002867032.1 TSUP family transporter -
  WHP52_RS00570 (WHP52_00570) ctsF 115799..116980 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  WHP52_RS00575 (WHP52_00575) ctsE 116977..118536 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  WHP52_RS00580 (WHP52_00580) ctsX 118526..119113 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  WHP52_RS00585 (WHP52_00585) ctsP 119117..119725 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  WHP52_RS00590 (WHP52_00590) ctsD 119718..121130 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP52_RS00595 (WHP52_00595) ctsR 121108..121419 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23743.73 Da        Isoelectric Point: 9.8159

>NTDB_id=953400 WHP52_RS00585 WP_002862129.1 119117..119725(-) (ctsP) [Campylobacter jejuni strain Z1323CCJ0007]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFELKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=953400 WHP52_RS00585 WP_002862129.1 119117..119725(-) (ctsP) [Campylobacter jejuni strain Z1323CCJ0007]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTAGGAATGTATGATTATGCAATGCTAGAAAGCATTAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTGAATTGAAAAATATTAGTCTTT
TAGAGCTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAATAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2U519

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.01

100

0.99