Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACHZDB_RS01460 Genome accession   NZ_CP172405
Coordinates   350628..351572 (-) Length   314 a.a.
NCBI ID   WP_045452701.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB503     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345628..356572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZDB_RS01445 (ACHZDB_01445) - 346308..348500 (-) 2193 WP_399424732.1 TonB-dependent receptor -
  ACHZDB_RS01450 (ACHZDB_01450) - 348639..349622 (-) 984 WP_050913417.1 siderophore ABC transporter substrate-binding protein -
  ACHZDB_RS01455 (ACHZDB_01455) - 349678..350631 (-) 954 WP_191117512.1 iron chelate uptake ABC transporter family permease subunit -
  ACHZDB_RS01460 (ACHZDB_01460) ceuB 350628..351572 (-) 945 WP_045452701.1 ABC transporter permease Machinery gene
  ACHZDB_RS01465 (ACHZDB_01465) - 351983..354118 (+) 2136 WP_399424734.1 condensation domain-containing protein -
  ACHZDB_RS01470 (ACHZDB_01470) - 354297..355040 (-) 744 WP_399425134.1 metallophosphoesterase family protein -
  ACHZDB_RS01475 (ACHZDB_01475) - 355132..356010 (-) 879 WP_079402363.1 AEC family transporter -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 33706.52 Da        Isoelectric Point: 8.4615

>NTDB_id=953399 ACHZDB_RS01460 WP_045452701.1 350628..351572(-) (ceuB) [Vibrio campbellii strain LB503]
MNAKIIFVFFLLCIVSIFIGANPIDWSLLLKMDESAWLPITASRLPRLVALILTGAGLAMCGVILQHIVRNRFVEPGTTG
GLDAAKLGILVSIVMLPNSDKLERMIFAVVFCFAAGLIYIAIVRKIKFSNSALVPVIGLMFGSVLSAIAEFYAYQNNVLQ
SMSGWLMGDFSKVVQEHYEIIYLILPTTLLTYFYANKFTVMGMGEDAASNLGINFATTAALGLMLVSVTVAVTVVTVGAI
HFVGLVIPNLVALKYGDHLKNTLPIVALGGASLLIFCDVISRLVVFPFEVPIGLTASAIGGTLFLVLLLKGARA

Nucleotide


Download         Length: 945 bp        

>NTDB_id=953399 ACHZDB_RS01460 WP_045452701.1 350628..351572(-) (ceuB) [Vibrio campbellii strain LB503]
ATGAACGCTAAAATTATCTTTGTTTTCTTTTTATTGTGTATCGTTTCCATTTTTATTGGCGCCAATCCAATCGATTGGTC
ACTACTGCTGAAGATGGACGAAAGTGCTTGGTTGCCGATTACTGCTAGCAGACTTCCGAGGTTGGTTGCGTTGATTCTGA
CTGGGGCCGGCTTGGCGATGTGCGGCGTCATCTTGCAACACATCGTCAGAAATCGTTTTGTAGAGCCTGGGACTACCGGC
GGCCTAGATGCTGCCAAGCTTGGTATTTTGGTATCGATCGTCATGTTGCCAAACTCAGATAAGCTTGAGCGCATGATTTT
TGCTGTCGTATTTTGCTTTGCAGCAGGGCTCATTTACATCGCGATCGTACGAAAAATTAAATTCAGTAATTCAGCATTGG
TCCCAGTCATTGGACTGATGTTCGGCAGCGTATTGAGCGCAATCGCTGAATTTTACGCTTATCAAAATAACGTTCTCCAA
AGCATGTCTGGCTGGTTAATGGGAGACTTTTCTAAGGTCGTACAGGAACACTACGAGATCATTTACCTGATCTTACCCAC
CACTCTGTTGACCTACTTCTACGCAAATAAATTTACCGTCATGGGCATGGGAGAAGATGCAGCATCTAACTTGGGCATTA
ACTTCGCAACAACGGCAGCGTTAGGTCTGATGCTGGTTTCCGTGACCGTTGCTGTGACCGTCGTGACCGTCGGGGCAATT
CATTTTGTCGGTTTAGTGATCCCAAACCTTGTCGCACTAAAATATGGCGACCACCTGAAAAACACACTGCCAATCGTGGC
ATTGGGTGGCGCATCACTGCTTATTTTTTGCGATGTGATAAGCAGACTTGTGGTCTTTCCTTTTGAGGTTCCGATCGGCC
TTACCGCGAGTGCGATTGGTGGCACCCTATTTCTTGTATTGCTCCTTAAAGGGGCACGTGCATGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

45.791

94.586

0.433