Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   WHP78_RS05920 Genome accession   NZ_CP148250
Coordinates   1142251..1142688 (-) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain Z1323CCJ0008     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1137251..1147688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP78_RS05905 (WHP78_05905) - 1139061..1139663 (+) 603 WP_002859688.1 gamma-glutamyl-CDP-amidate hydrolase -
  WHP78_RS05910 (WHP78_05910) - 1139665..1140423 (+) 759 WP_025398825.1 CTP:phosphoglutamine cytidylyltransferase -
  WHP78_RS05915 (WHP78_05915) priA 1140416..1142269 (-) 1854 WP_002877679.1 primosomal protein N' -
  WHP78_RS05920 (WHP78_05920) Cj0683 1142251..1142688 (-) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP78_RS05925 (WHP78_05925) - 1142685..1142927 (-) 243 WP_002854947.1 hypothetical protein -
  WHP78_RS05930 (WHP78_05930) - 1142917..1143147 (-) 231 WP_002852327.1 hypothetical protein -
  WHP78_RS05935 (WHP78_05935) uvrB 1143301..1145274 (+) 1974 WP_338877556.1 excinuclease ABC subunit UvrB -
  WHP78_RS05940 (WHP78_05940) - 1145376..1146017 (-) 642 WP_234744382.1 DUF4118 domain-containing protein -
  WHP78_RS05945 (WHP78_05945) - 1146041..1147192 (-) 1152 WP_234744381.1 sensor histidine kinase KdpD -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=953386 WHP78_RS05920 WP_002852324.1 1142251..1142688(-) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0008]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=953386 WHP78_RS05920 WP_002852324.1 1142251..1142688(-) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0008]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1