Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QMM10_RS02445 Genome accession   NZ_AP025938
Coordinates   478008..478739 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701057     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 473008..483739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM10_RS02415 (PC1044_04660) dnaK 473025..474848 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  QMM10_RS02420 (PC1044_04670) - 474939..475214 (+) 276 WP_000386177.1 hypothetical protein -
  QMM10_RS02425 (PC1044_04680) dnaJ 475419..476555 (+) 1137 WP_001836079.1 molecular chaperone DnaJ -
  QMM10_RS02430 - 476877..477071 (-) 195 WP_050207116.1 hypothetical protein -
  QMM10_RS02435 (PC1044_04690) - 477233..477520 (-) 288 WP_000777760.1 hypothetical protein -
  QMM10_RS02440 (PC1044_04700) - 477530..477940 (-) 411 WP_001278301.1 HIT family protein -
  QMM10_RS02445 (PC1044_04710) pptA 478008..478739 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  QMM10_RS02450 (PC1044_04720) - 478736..479785 (+) 1050 WP_000653771.1 ABC transporter permease -
  QMM10_RS02455 (PC1044_04730) - 479953..480282 (-) 330 WP_050207112.1 hypothetical protein -
  QMM10_RS02460 (PC1044_04740) - 480559..480897 (+) 339 WP_050249616.1 LytTR family DNA-binding domain-containing protein -
  QMM10_RS02465 (PC1044_04750) comE/blpR 480902..481639 (+) 738 WP_001219145.1 response regulator transcription factor Regulator
  QMM10_RS02470 (PC1044_04760) - 481653..482993 (+) 1341 WP_050212001.1 sensor histidine kinase -
  QMM10_RS02475 (PC1044_04770) blpC 483035..483190 (-) 156 WP_044791640.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=95338 QMM10_RS02445 WP_000889923.1 478008..478739(+) (pptA) [Streptococcus pneumoniae strain PZ900701057]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=95338 QMM10_RS02445 WP_000889923.1 478008..478739(+) (pptA) [Streptococcus pneumoniae strain PZ900701057]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment