Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHP69_RS06940 Genome accession   NZ_CP148248
Coordinates   1326542..1326853 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0009     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1321542..1331853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP69_RS06920 (WHP69_06920) ctsE 1322411..1323970 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  WHP69_RS06925 (WHP69_06925) ctsX 1323960..1324547 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  WHP69_RS06930 (WHP69_06930) ctsP 1324551..1325159 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  WHP69_RS06935 (WHP69_06935) ctsD 1325152..1326564 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP69_RS06940 (WHP69_06940) ctsR 1326542..1326853 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  WHP69_RS06945 (WHP69_06945) nifJ 1326877..1330437 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHP69_RS06950 (WHP69_06950) - 1330530..1331171 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=953362 WHP69_RS06940 WP_002862131.1 1326542..1326853(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0009]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=953362 WHP69_RS06940 WP_002862131.1 1326542..1326853(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0009]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99