Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | WHP53_RS02080 | Genome accession | NZ_CP148242 |
| Coordinates | 401632..402582 (-) | Length | 316 a.a. |
| NCBI ID | WP_002866164.1 | Uniprot ID | Q9ALT6 |
| Organism | Campylobacter jejuni strain Z1323CCJ0010 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 396064..432377 | 401632..402582 | within | 0 |
Gene organization within MGE regions
Location: 396064..432377
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WHP53_RS02055 (WHP53_02055) | rfaD | 396064..397017 (+) | 954 | WP_002852832.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| WHP53_RS02060 (WHP53_02060) | rfaE1 | 397010..398395 (+) | 1386 | WP_002890180.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| WHP53_RS02065 (WHP53_02065) | gmhA | 398392..398952 (+) | 561 | WP_087695966.1 | D-sedoheptulose 7-phosphate isomerase | - |
| WHP53_RS02070 (WHP53_02070) | - | 398956..399933 (-) | 978 | WP_002866168.1 | hypothetical protein | - |
| WHP53_RS02075 (WHP53_02075) | - | 400081..401580 (-) | 1500 | WP_002877116.1 | MBOAT family O-acyltransferase | - |
| WHP53_RS02080 (WHP53_02080) | waaF | 401632..402582 (-) | 951 | WP_002866164.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| WHP53_RS02085 (WHP53_02085) | waaV | 402641..403459 (+) | 819 | WP_002877115.1 | glycosyltransferase family 2 protein | - |
| WHP53_RS02090 (WHP53_02090) | wlaTC | 403462..404421 (-) | 960 | WP_218985767.1 | class E lipooligosaccharide biosynthesis protein WlaTC | - |
| WHP53_RS02095 (WHP53_02095) | wlaTB | 404418..405374 (-) | 957 | WP_002869613.1 | class E lipooligosaccharide biosynthesis protein WlaTB | - |
| WHP53_RS02100 (WHP53_02100) | - | 405367..406140 (-) | 774 | WP_002866160.1 | glycosyltransferase family 25 protein | - |
| WHP53_RS02105 (WHP53_02105) | - | 406211..407233 (+) | 1023 | WP_220551444.1 | hypothetical protein | - |
| WHP53_RS02110 (WHP53_02110) | - | 407230..408483 (+) | 1254 | WP_002876189.1 | DUF2972 domain-containing protein | - |
| WHP53_RS02115 (WHP53_02115) | wlaRG | 408515..409600 (-) | 1086 | WP_002876187.1 | class E lipooligosaccharide biosynthesis aminotransferase WlaRG | - |
| WHP53_RS02120 (WHP53_02120) | - | 409597..410673 (-) | 1077 | WP_002876186.1 | glycosyltransferase family A protein | - |
| WHP53_RS02125 (WHP53_02125) | - | 410970..411497 (-) | 528 | WP_002876185.1 | GNAT family N-acetyltransferase | - |
| WHP53_RS02130 (WHP53_02130) | - | 411494..411961 (-) | 468 | WP_002876184.1 | acyltransferase | - |
| WHP53_RS02135 (WHP53_02135) | wlaRB | 411951..412355 (-) | 405 | WP_002860228.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB | - |
| WHP53_RS02140 (WHP53_02140) | wlaRA | 412377..412802 (-) | 426 | WP_002860227.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA | - |
| WHP53_RS02145 (WHP53_02145) | rfbB | 412805..413836 (-) | 1032 | WP_002860226.1 | dTDP-glucose 4,6-dehydratase | - |
| WHP53_RS02150 (WHP53_02150) | rfbA | 413836..414714 (-) | 879 | WP_338877567.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| WHP53_RS02155 (WHP53_02155) | - | 414725..415426 (-) | 702 | WP_002877056.1 | glycosyltransferase family 2 protein | - |
| WHP53_RS02160 (WHP53_02160) | htrB | 415423..416301 (-) | 879 | WP_002801091.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| WHP53_RS02165 (WHP53_02165) | waaC | 416291..417319 (-) | 1029 | WP_002866145.1 | lipopolysaccharide heptosyltransferase I | - |
| WHP53_RS02170 (WHP53_02170) | - | 417385..418179 (+) | 795 | WP_002877059.1 | 3'-5' exonuclease | - |
| WHP53_RS02175 (WHP53_02175) | galE | 418238..419224 (+) | 987 | WP_002877060.1 | UDP-glucose 4-epimerase GalE | - |
| WHP53_RS02180 (WHP53_02180) | pglK | 419218..420912 (+) | 1695 | WP_002877063.1 | ABC-type lipopolysaccharide transporter PglK | - |
| WHP53_RS02185 (WHP53_02185) | pglH | 420909..421988 (+) | 1080 | WP_072238645.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| WHP53_RS02190 (WHP53_02190) | pglI | 421981..422910 (+) | 930 | WP_002866141.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| WHP53_RS02195 (WHP53_02195) | pglJ | 422898..423995 (+) | 1098 | WP_002866140.1 | N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase | - |
| WHP53_RS02200 (WHP53_02200) | pglB | 423999..426140 (+) | 2142 | WP_002866139.1 | undecaprenyl-diphosphooligosaccharide--protein glycotransferase | - |
| WHP53_RS02205 (WHP53_02205) | pglA | 426150..427280 (+) | 1131 | WP_002866138.1 | N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase | - |
| WHP53_RS02210 (WHP53_02210) | pglC | 427273..427875 (+) | 603 | WP_002853498.1 | undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase | - |
| WHP53_RS02215 (WHP53_02215) | pglD | 427862..428452 (+) | 591 | WP_002853531.1 | UDP-N-acetylbacillosamine N-acetyltransferase | - |
| WHP53_RS02220 (WHP53_02220) | pglE | 428550..429710 (+) | 1161 | WP_002866137.1 | UDP-N-acetylbacillosamine transaminase | - |
| WHP53_RS02225 (WHP53_02225) | pglF | 429712..431484 (+) | 1773 | WP_002866136.1 | UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) | - |
| WHP53_RS02230 (WHP53_02230) | pglG | 431484..432377 (+) | 894 | WP_002866135.1 | PDC sensor domain-containing protein | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36378.95 Da Isoelectric Point: 10.3102
>NTDB_id=953323 WHP53_RS02080 WP_002866164.1 401632..402582(-) (waaF) [Campylobacter jejuni strain Z1323CCJ0010]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP
Nucleotide
Download Length: 951 bp
>NTDB_id=953323 WHP53_RS02080 WP_002866164.1 401632..402582(-) (waaF) [Campylobacter jejuni strain Z1323CCJ0010]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.249 |
99.051 |
0.934 |