Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   WHP38_RS03350 Genome accession   NZ_CP148240
Coordinates   632380..633330 (-) Length   316 a.a.
NCBI ID   WP_002866164.1    Uniprot ID   Q9ALT6
Organism   Campylobacter jejuni strain Z1323CCJ0011     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 627380..638330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP38_RS03330 (WHP38_03330) rfaE1 627758..629143 (+) 1386 WP_002890180.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  WHP38_RS03335 (WHP38_03335) gmhA 629140..629700 (+) 561 WP_087695966.1 D-sedoheptulose 7-phosphate isomerase -
  WHP38_RS03340 (WHP38_03340) - 629704..630681 (-) 978 WP_002866168.1 hypothetical protein -
  WHP38_RS03345 (WHP38_03345) - 630829..632328 (-) 1500 WP_002877116.1 MBOAT family O-acyltransferase -
  WHP38_RS03350 (WHP38_03350) waaF 632380..633330 (-) 951 WP_002866164.1 lipopolysaccharide heptosyltransferase II Regulator
  WHP38_RS03355 (WHP38_03355) waaV 633389..634207 (+) 819 WP_002877115.1 glycosyltransferase family 2 protein -
  WHP38_RS03360 (WHP38_03360) wlaTC 634210..635169 (-) 960 WP_218985767.1 class E lipooligosaccharide biosynthesis protein WlaTC -
  WHP38_RS03365 (WHP38_03365) wlaTB 635166..636122 (-) 957 WP_002869613.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  WHP38_RS03370 (WHP38_03370) - 636115..636888 (-) 774 WP_002866160.1 glycosyltransferase family 25 protein -
  WHP38_RS03375 (WHP38_03375) - 636959..637981 (+) 1023 WP_220551444.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36378.95 Da        Isoelectric Point: 10.3102

>NTDB_id=953297 WHP38_RS03350 WP_002866164.1 632380..633330(-) (waaF) [Campylobacter jejuni strain Z1323CCJ0011]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP

Nucleotide


Download         Length: 951 bp        

>NTDB_id=953297 WHP38_RS03350 WP_002866164.1 632380..633330(-) (waaF) [Campylobacter jejuni strain Z1323CCJ0011]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9ALT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.249

99.051

0.934