Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   WHP38_RS02065 Genome accession   NZ_CP148240
Coordinates   390338..391306 (-) Length   322 a.a.
NCBI ID   WP_002874446.1    Uniprot ID   A0AB36G4C9
Organism   Campylobacter jejuni strain Z1323CCJ0011     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 385338..396306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP38_RS02040 (WHP38_02040) - 386870..387424 (+) 555 WP_002871963.1 membrane protein -
  WHP38_RS02050 (WHP38_02050) ceuB 387650..388642 (-) 993 WP_338877576.1 enterochelin ABC transporter substrate-binding protein CeuB -
  WHP38_RS02055 (WHP38_02055) ceuD 388655..389410 (-) 756 WP_002858409.1 ABC transporter ATP-binding protein -
  WHP38_RS02060 (WHP38_02060) ceuC 389407..390345 (-) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  WHP38_RS02065 (WHP38_02065) ceuB 390338..391306 (-) 969 WP_002874446.1 ABC transporter permease Machinery gene
  WHP38_RS02070 (WHP38_02070) pldA 391392..392381 (-) 990 WP_002874447.1 phospholipase A -
  WHP38_RS02075 (WHP38_02075) mobA 392378..392953 (-) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  WHP38_RS02080 (WHP38_02080) - 393015..394322 (+) 1308 WP_002874448.1 NFACT family protein -
  WHP38_RS02085 (WHP38_02085) - 394324..394662 (+) 339 WP_002852397.1 hypothetical protein -
  WHP38_RS02090 (WHP38_02090) cdsA 394671..395396 (+) 726 WP_002869557.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35455.37 Da        Isoelectric Point: 9.6678

>NTDB_id=953291 WHP38_RS02065 WP_002874446.1 390338..391306(-) (ceuB) [Campylobacter jejuni strain Z1323CCJ0011]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=953291 WHP38_RS02065 WP_002874446.1 390338..391306(-) (ceuB) [Campylobacter jejuni strain Z1323CCJ0011]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTATTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAAGGAAATTATGAATT
GCTCTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994