Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHP38_RS01530 Genome accession   NZ_CP148240
Coordinates   280988..281299 (+) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0011     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 275988..286299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP38_RS01520 (WHP38_01520) - 276670..277311 (+) 642 WP_002867040.1 HAD family hydrolase -
  WHP38_RS01525 (WHP38_01525) nifJ 277404..280964 (+) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHP38_RS01530 (WHP38_01530) ctsR 280988..281299 (+) 312 WP_002862131.1 hypothetical protein Machinery gene
  WHP38_RS01535 (WHP38_01535) ctsD 281277..282689 (+) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP38_RS01540 (WHP38_01540) ctsP 282682..283290 (+) 609 WP_002862129.1 ATP-binding protein Machinery gene
  WHP38_RS01545 (WHP38_01545) ctsX 283294..283881 (+) 588 WP_002867036.1 hypothetical protein Machinery gene
  WHP38_RS01550 (WHP38_01550) ctsE 283871..285430 (+) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=953283 WHP38_RS01530 WP_002862131.1 280988..281299(+) (ctsR) [Campylobacter jejuni strain Z1323CCJ0011]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=953283 WHP38_RS01530 WP_002862131.1 280988..281299(+) (ctsR) [Campylobacter jejuni strain Z1323CCJ0011]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99