Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   ACH6F1_RS05660 Genome accession   NZ_CP172397
Coordinates   1070356..1070661 (+) Length   101 a.a.
NCBI ID   WP_025399042.1    Uniprot ID   -
Organism   Campylobacter coli strain YH506     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1065356..1075661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6F1_RS05635 (ACH6F1_05625) rpsR 1065714..1065974 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  ACH6F1_RS05640 (ACH6F1_05630) lon 1066031..1068406 (-) 2376 WP_395941476.1 endopeptidase La -
  ACH6F1_RS05645 (ACH6F1_05635) - 1068422..1069069 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  ACH6F1_RS05650 (ACH6F1_05640) fliW 1069233..1069622 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  ACH6F1_RS05655 (ACH6F1_05645) proC 1069622..1070359 (+) 738 WP_025399041.1 pyrroline-5-carboxylate reductase Machinery gene
  ACH6F1_RS05660 (ACH6F1_05650) ctsT 1070356..1070661 (+) 306 WP_025399042.1 hypothetical protein Machinery gene
  ACH6F1_RS05665 (ACH6F1_05655) - 1070654..1071322 (+) 669 WP_025399043.1 hypothetical protein -
  ACH6F1_RS05670 (ACH6F1_05660) - 1071319..1071771 (+) 453 WP_002777117.1 hypothetical protein -
  ACH6F1_RS05675 (ACH6F1_05665) - 1071764..1072393 (-) 630 WP_002824854.1 uroporphyrinogen-III synthase -
  ACH6F1_RS05680 (ACH6F1_05670) thiE 1072371..1073003 (-) 633 WP_002824853.1 thiamine phosphate synthase -
  ACH6F1_RS05685 (ACH6F1_05675) thiD 1072993..1073805 (-) 813 WP_395941477.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACH6F1_RS05690 (ACH6F1_05680) - 1073805..1074488 (-) 684 WP_002824849.1 3-methyladenine DNA glycosylase -
  ACH6F1_RS05695 (ACH6F1_05685) - 1074485..1075246 (-) 762 WP_072215388.1 ATP-binding protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12308.10 Da        Isoelectric Point: 6.0617

>NTDB_id=953277 ACH6F1_RS05660 WP_025399042.1 1070356..1070661(+) (ctsT) [Campylobacter coli strain YH506]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENSANDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=953277 ACH6F1_RS05660 WP_025399042.1 1070356..1070661(+) (ctsT) [Campylobacter coli strain YH506]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTCTGCAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

47.959

97.03

0.465