Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHP34_RS07255 Genome accession   NZ_CP148234
Coordinates   1423242..1423553 (-) Length   103 a.a.
NCBI ID   WP_015016496.1    Uniprot ID   A0A3X8SVA4
Organism   Campylobacter jejuni strain Z1323CCJ0020     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1418242..1428553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP34_RS07235 (WHP34_07235) ctsE 1419111..1420670 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  WHP34_RS07240 (WHP34_07240) ctsX 1420660..1421247 (-) 588 WP_002851370.1 membrane protein Machinery gene
  WHP34_RS07245 (WHP34_07245) ctsP 1421251..1421859 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP34_RS07250 (WHP34_07250) ctsD 1421852..1423264 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP34_RS07255 (WHP34_07255) ctsR 1423242..1423553 (-) 312 WP_015016496.1 hypothetical protein Machinery gene
  WHP34_RS07260 (WHP34_07260) nifJ 1423577..1427137 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHP34_RS07265 (WHP34_07265) - 1427230..1427871 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12457.35 Da        Isoelectric Point: 5.8722

>NTDB_id=953225 WHP34_RS07255 WP_015016496.1 1423242..1423553(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0020]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=953225 WHP34_RS07255 WP_015016496.1 1423242..1423553(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0020]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3X8SVA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99