Detailed information NTG0953219

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: ACH6FA_RS02375
• Genome accession: NZ_CP172396
• Coordinates: 459038..461611 (-)
• Length: 857 a.a.
• NCBI ID: WP_042963323.1
• Uniprot ID: -
• Organism: Campylobacter coli strain YH505
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 454038..466611

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACH6FA_RS02365 (ACH6FA_02365)	maf	456515..457066 (+)	552	WP_057044557.1	septum formation inhibitor Maf	-
ACH6FA_RS02370 (ACH6FA_02370)	-	457063..458994 (+)	1932	WP_002825095.1	penicillin-binding protein 1A	-
ACH6FA_RS02375 (ACH6FA_02375)	clpC	459038..461611 (-)	2574	WP_042963323.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
ACH6FA_RS02380 (ACH6FA_02380)	-	461745..462026 (-)	282	WP_002779742.1	metal-sensing transcriptional repressor	-
ACH6FA_RS02385 (ACH6FA_02385)	-	462169..463506 (+)	1338	WP_395941297.1	S41 family peptidase	-
ACH6FA_RS02390 (ACH6FA_02390)	purC	463509..464219 (+)	711	WP_002825090.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
ACH6FA_RS02395 (ACH6FA_02395)	purS	464228..464473 (+)	246	WP_002776055.1	phosphoribosylformylglycinamidine synthase subunit PurS	-
ACH6FA_RS02400 (ACH6FA_02400)	purQ	464473..465169 (+)	697	Protein_458	phosphoribosylformylglycinamidine synthase I	-
ACH6FA_RS02405 (ACH6FA_02405)	-	465201..466313 (+)	1113	WP_234891740.1	SH3 domain-containing protein	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95580.54 Da
• Isoelectric Point: 5.2845

>NTDB_id=953219 ACH6FA_RS02375 WP_042963323.1 459038..461611(-) (clpC) [Campylobacter coli strain YH505]
MANIQEFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALIVDSSSILNQICNKFNISKEALELEIKSRISNLATSSNVN
RENVRFSNEFINSLESAKGLMSANGDNYLSVDTWLISESEKNPIREILAKFIDIKEFQKELQNLRAGRKIESKTSDETLD
SLNKFGIDLTAKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVEALAQRIIKKDVPKSLQNKKVIA
LDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILFIDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYR
KYFEKDAALQRRFQPVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAIDLIDEAAAE
LKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELANLKEKQSALNSQFENEKSVFDSISAKKKEID
SLKNEAVFAKNKGEFQKAAELEYGKIPECEKEVANLEEKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQ
KFLEVEKHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKFLFDDEKAMIRFDMSEF
MEKHSVSRLLGAPPGYVGHEEGGELTEAVRRKPYSVLLFDEVEKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILT
SNIASSAIMNLSGKEQEDAVKNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQKSLENKGIKASLSENAAL
LIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADKLNENDEIVIDAKNDEIVIEKA

Nucleotide

• Length: 2574 bp

>NTDB_id=953219 ACH6FA_RS02375 WP_042963323.1 459038..461611(-) (clpC) [Campylobacter coli strain YH505]
ATGGCAAATATACAAGAATTTTTAACCGACAATATGCTTTCAAACCTTGAAAGTGCAGCGTCTTTGGCGATTCATTCTAA
AAATAATGAAGTTGTCCCTTTACATCTTTTATGGGCTTTAATTGTAGACAGTTCAAGTATTTTAAATCAAATTTGTAATA
AATTTAATATTTCAAAAGAAGCTTTAGAACTTGAAATCAAAAGCAGAATTTCAAATCTTGCAACAAGCTCTAATGTCAAT
CGTGAAAATGTGCGTTTTTCTAATGAATTTATCAATTCCTTAGAAAGTGCTAAAGGACTTATGAGTGCCAATGGTGATAA
TTACTTAAGTGTAGATACTTGGCTTATAAGCGAAAGCGAAAAAAATCCTATTAGAGAAATTTTAGCCAAATTTATAGATA
TTAAAGAATTTCAAAAAGAGCTCCAAAATTTAAGAGCAGGACGCAAAATCGAAAGCAAAACAAGTGATGAAACCCTAGAT
AGCTTAAATAAATTTGGTATAGATTTAACCGCAAAAGCAAGCGAAGGAAAGCTTGATCCTGTTATAGGCAGAGAAGAAGA
AATCGAACGCTTAATGCAAATTCTTATACGCAAAACAAAAAACAACCCTATACTTTTAGGTGAACCAGGAGTAGGAAAAA
CAGCTATAGTGGAAGCTTTAGCACAAAGAATTATCAAAAAAGATGTTCCAAAATCTTTGCAAAATAAAAAAGTCATCGCT
CTTGATATGAGTGCATTGATCGCAGGTGCAAAATACAGAGGAGAATTTGAAGATAGGTTAAAAGCTGTGGTTAATGAAGT
AATAAAAAGTGAAAATATCATTCTTTTTATTGATGAAATTCATACTATAGTAGGAGCTGGAGCGAGTGAAGGCAGTATGG
ATGCGGCAAATATTTTAAAACCCGCTCTTGCAAGAGGTGAACTCCATACCATAGGCGCAACTACTTTAAAAGAATATCGT
AAATATTTTGAAAAAGATGCAGCCTTGCAACGCCGTTTTCAACCTGTAAATGTGGGCGAACCAAGTGTTAATGAGGCTTT
GGCTATGTTAAGGGGTATAAAAGAAAAGCTTGAAATTCATCATAATGTAACCATAAATGATAGTGCTTTAGTAGCCGCAG
CTAAACTTTCAAAGCGTTATATTGCCGATCGTTTTTTACCTGATAAGGCTATTGATTTAATCGATGAAGCTGCAGCTGAA
CTGAAAATGCAAATTGAAAGCGAACCAAGTTCTTTAAGAAAAGTACGCAAAGATATAGAAACTTTAGAAGTTGAAAATGA
AGCTTTAAAAATGGAAAATGATGAAAAAAATCAAAAAAGACTCGATGAAATCGCAAAAGAACTGGCCAATTTAAAAGAAA
AACAAAGTGCTTTAAATTCGCAATTTGAAAATGAAAAAAGTGTTTTTGATAGCATAAGCGCAAAGAAAAAAGAAATCGAT
AGTCTTAAAAACGAAGCTGTTTTTGCAAAAAATAAGGGTGAATTCCAAAAAGCTGCAGAATTAGAATATGGCAAAATTCC
AGAATGCGAAAAAGAAGTGGCAAATTTAGAAGAAAAATGGAAAAAAATGAGCGAAAATGGAGTCTTGCTTAAAAATCAAG
TGGATGAAGATTTGGTTGCTGGAATTTTAAGTAAATGGACAGGAATTAGCGTGCAAAAAATGCTGACTTCAGAGAAGCAA
AAATTTTTGGAAGTAGAAAAACACTTAAAAGAAAGTGTGATTGGGCAAGATAAGGCTCTAAGCGCTTTAGCAAGAGCTAT
CAAACGCAATAAAGCAGGATTAAATGCAGACAACAAACCTATAGGAAGCTTTTTATTTTTAGGGCCTACAGGAGTAGGAA
AAACACAATCTGCTAAGGCTTTGGCGAAATTTTTATTTGATGATGAAAAAGCAATGATTCGCTTTGATATGAGTGAATTT
ATGGAAAAACATAGCGTTTCAAGACTCTTAGGAGCGCCTCCAGGTTATGTAGGGCATGAAGAAGGCGGAGAGCTTACTGA
AGCGGTGCGTAGAAAACCTTATAGCGTGCTTTTATTTGATGAAGTCGAAAAAGCCCACAAGGATGTGTTTAATGTACTTT
TAGGAATTTTAGACGATGGTAGGGCAACTGATAGCAAGGGTGTAACTGTGGATTTTAAAAATACCATTATTATTTTAACT
TCTAATATCGCCTCAAGTGCTATCATGAATTTAAGCGGAAAAGAACAAGAAGATGCGGTAAAAAATGAGTTAAAAAATTT
CTTTAAACCTGAATTTTTAAACCGCTTAGACGATATCATCACCTTTAATCCACTTGGAAAAGATGAGGCATATGAGATAG
TTAAACTTTTATTTAAAGACTTGCAAAAAAGTTTGGAAAATAAGGGTATAAAAGCAAGTCTTAGTGAAAATGCTGCGCTT
TTAATCGCTAAGGACGGATTTGATCCTGACTTTGGTGCTAGACCTTTAAGAAGGGCTATTTATGATTTAATCGAAGACAA
GCTAAGCGATATGATACTTGCAGACAAGCTTAATGAAAATGATGAGATTGTCATCGATGCAAAAAATGATGAGATTGTCA
TCGAAAAAGCTTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (599-759)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (765-845)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-316)

• AAA lid domain (AAA_lid_9) (342-444)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-70)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.494	99.533	0.433
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.695	100	0.425