Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   WHP34_RS05630 Genome accession   NZ_CP148234
Coordinates   1089663..1090622 (+) Length   319 a.a.
NCBI ID   WP_002875425.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0020     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1069959..1102842 1089663..1090622 within 0


Gene organization within MGE regions


Location: 1069959..1102842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP34_RS05535 (WHP34_05535) pglI 1069959..1070888 (-) 930 WP_002890470.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  WHP34_RS05540 (WHP34_05540) pglH 1070881..1071960 (-) 1080 WP_002859237.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  WHP34_RS05545 (WHP34_05545) pglK 1071957..1073651 (-) 1695 WP_002890469.1 ABC-type lipopolysaccharide transporter PglK -
  WHP34_RS05550 (WHP34_05550) galE 1073645..1074631 (-) 987 WP_002853529.1 UDP-glucose 4-epimerase GalE -
  WHP34_RS05555 (WHP34_05555) - 1074689..1075483 (-) 795 WP_002853812.1 3'-5' exonuclease -
  WHP34_RS05560 (WHP34_05560) waaC 1075549..1076577 (+) 1029 WP_002855693.1 lipopolysaccharide heptosyltransferase I -
  WHP34_RS05565 (WHP34_05565) htrB 1076567..1077454 (+) 888 WP_002890465.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  WHP34_RS05570 (WHP34_05570) - 1077451..1078998 (+) 1548 WP_002858148.1 glycosyltransferase -
  WHP34_RS05575 (WHP34_05575) - 1079002..1080174 (+) 1173 WP_002858013.1 glycosyltransferase family 2 protein -
  WHP34_RS05580 (WHP34_05580) - 1080158..1081153 (-) 996 WP_002858358.1 capsular polysaccharide synthesis protein -
  WHP34_RS05585 (WHP34_05585) - 1081211..1082380 (+) 1170 WP_002858320.1 glycosyltransferase family 2 protein -
  WHP34_RS05590 (WHP34_05590) wlaN 1082369..1083280 (-) 912 WP_002858039.1 beta-1,3 galactosyltransferase -
  WHP34_RS05595 (WHP34_05595) cstIII 1083335..1084219 (+) 885 WP_002858290.1 alpha-2,3-sialyltransferase -
  WHP34_RS05600 (WHP34_05600) neuB1 1084200..1085231 (+) 1032 WP_002858213.1 sialic acid synthase -
  WHP34_RS05605 (WHP34_05605) neuC 1085228..1086343 (+) 1116 WP_002858400.1 UDP-N-acetylglucosamine 2-epimerase -
  WHP34_RS05610 (WHP34_05610) - 1086340..1087254 (+) 915 Protein_1084 beta-1,4-N-acetylgalactosaminyltransferase -
  WHP34_RS05615 (WHP34_05615) - 1087288..1087950 (+) 663 WP_002881429.1 N-acylneuraminate cytidylyltransferase -
  WHP34_RS05620 (WHP34_05620) - 1087945..1088796 (-) 852 WP_043020460.1 glycosyltransferase -
  WHP34_RS05625 (WHP34_05625) waaV 1088780..1089604 (-) 825 WP_002858096.1 glycosyltransferase family 2 protein -
  WHP34_RS05630 (WHP34_05630) waaF 1089663..1090622 (+) 960 WP_002875425.1 lipopolysaccharide heptosyltransferase II Regulator
  WHP34_RS05635 (WHP34_05635) gmhA 1090603..1091163 (-) 561 WP_002858021.1 D-sedoheptulose 7-phosphate isomerase -
  WHP34_RS05640 (WHP34_05640) rfaE1 1091160..1092545 (-) 1386 WP_002890180.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  WHP34_RS05645 (WHP34_05645) rfaD 1092538..1093491 (-) 954 WP_002852832.1 ADP-glyceromanno-heptose 6-epimerase -
  WHP34_RS05650 (WHP34_05650) gmhB 1093492..1094052 (-) 561 WP_052782596.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  WHP34_RS05655 (WHP34_05655) - 1094133..1094435 (+) 303 WP_002852762.1 cytochrome c -
  WHP34_RS05660 (WHP34_05660) ccoS 1094458..1094664 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  WHP34_RS05665 (WHP34_05665) - 1094661..1097018 (-) 2358 WP_074471057.1 heavy metal translocating P-type ATPase -
  WHP34_RS05670 (WHP34_05670) rho 1097127..1098425 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  WHP34_RS05675 (WHP34_05675) dnaX 1098429..1099958 (+) 1530 WP_002875420.1 DNA polymerase III subunit gamma/tau -
  WHP34_RS05680 (WHP34_05680) - 1099955..1100182 (-) 228 WP_002868592.1 DUF2165 family protein -
  WHP34_RS05685 (WHP34_05685) - 1100298..1100477 (-) 180 WP_002868591.1 DUF2165 family protein -
  WHP34_RS05690 (WHP34_05690) copA 1100549..1102648 (-) 2100 WP_002875419.1 copper-translocating P-type ATPase CopA -
  WHP34_RS05695 (WHP34_05695) - 1102648..1102842 (-) 195 WP_002852760.1 cation transporter -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36734.30 Da        Isoelectric Point: 10.2412

>NTDB_id=953212 WHP34_RS05630 WP_002875425.1 1089663..1090622(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0020]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=953212 WHP34_RS05630 WP_002875425.1 1089663..1090622(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0020]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1