Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | WHP34_RS05280 | Genome accession | NZ_CP148234 |
| Coordinates | 1019488..1019790 (+) | Length | 100 a.a. |
| NCBI ID | WP_002853046.1 | Uniprot ID | Q0P9H7 |
| Organism | Campylobacter jejuni strain Z1323CCJ0020 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1014488..1024790
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WHP34_RS05255 (WHP34_05255) | rpsR | 1014851..1015111 (+) | 261 | WP_002853032.1 | 30S ribosomal protein S18 | - |
| WHP34_RS05260 (WHP34_05260) | lon | 1015171..1017546 (-) | 2376 | WP_002853487.1 | endopeptidase La | - |
| WHP34_RS05265 (WHP34_05265) | - | 1017563..1018210 (-) | 648 | WP_002852961.1 | outer membrane protein assembly factor BamD | - |
| WHP34_RS05270 (WHP34_05270) | fliW | 1018371..1018760 (+) | 390 | WP_002852982.1 | flagellar assembly protein FliW | - |
| WHP34_RS05275 (WHP34_05275) | proC | 1018760..1019491 (+) | 732 | WP_002864259.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| WHP34_RS05280 (WHP34_05280) | ctsT | 1019488..1019790 (+) | 303 | WP_002853046.1 | type II secretion system protein | Machinery gene |
| WHP34_RS05285 (WHP34_05285) | - | 1019787..1020449 (+) | 663 | WP_002858296.1 | hypothetical protein | - |
| WHP34_RS05290 (WHP34_05290) | - | 1020446..1020898 (+) | 453 | WP_002859148.1 | hypothetical protein | - |
| WHP34_RS05295 (WHP34_05295) | hemD | 1020895..1021524 (-) | 630 | WP_002878794.1 | uroporphyrinogen-III synthase | - |
| WHP34_RS05300 (WHP34_05300) | thiE | 1021502..1022134 (-) | 633 | WP_002852670.1 | thiamine phosphate synthase | - |
| WHP34_RS05305 (WHP34_05305) | thiD | 1022124..1022936 (-) | 813 | WP_002890078.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| WHP34_RS05310 (WHP34_05310) | - | 1022933..1023619 (-) | 687 | WP_002852847.1 | endonuclease III domain-containing protein | - |
| WHP34_RS05315 (WHP34_05315) | - | 1023616..1024377 (-) | 762 | WP_002852748.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 12162.27 Da Isoelectric Point: 6.2957
>NTDB_id=953210 WHP34_RS05280 WP_002853046.1 1019488..1019790(+) (ctsT) [Campylobacter jejuni strain Z1323CCJ0020]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
Nucleotide
Download Length: 303 bp
>NTDB_id=953210 WHP34_RS05280 WP_002853046.1 1019488..1019790(+) (ctsT) [Campylobacter jejuni strain Z1323CCJ0020]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
99 |
100 |
0.99 |