Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   ACH6E9_RS07720 Genome accession   NZ_CP172392
Coordinates   1465011..1465607 (-) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain YH507     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1460011..1470607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6E9_RS07700 (ACH6E9_07705) - 1460766..1461530 (+) 765 WP_002781156.1 TIGR02757 family protein -
  ACH6E9_RS07705 (ACH6E9_07710) - 1461533..1462297 (+) 765 WP_002784060.1 TSUP family transporter -
  ACH6E9_RS07710 (ACH6E9_07715) ctsF 1462294..1463469 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  ACH6E9_RS07715 (ACH6E9_07720) ctsE 1463456..1465018 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  ACH6E9_RS07720 (ACH6E9_07725) ctsX 1465011..1465607 (-) 597 WP_002779313.1 CDC27 family protein Machinery gene
  ACH6E9_RS07725 (ACH6E9_07730) ctsP 1465604..1466200 (-) 597 WP_395941748.1 ATP-binding protein Machinery gene
  ACH6E9_RS07730 (ACH6E9_07735) ctsD 1466193..1467611 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6E9_RS07735 (ACH6E9_07740) ctsR 1467589..1467900 (-) 312 WP_002779316.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=953205 ACH6E9_RS07720 WP_002779313.1 1465011..1465607(-) (ctsX) [Campylobacter coli strain YH507]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=953205 ACH6E9_RS07720 WP_002779313.1 1465011..1465607(-) (ctsX) [Campylobacter coli strain YH507]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434