Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   WHQ28_RS06770 Genome accession   NZ_CP148233
Coordinates   1301649..1302164 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain Z1323CCJ0027     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1296649..1307164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ28_RS06755 (WHQ28_06755) flaA 1296757..1298484 (-) 1728 WP_338878200.1 flagellin -
  WHQ28_RS06760 (WHQ28_06760) - 1298581..1300398 (-) 1818 WP_338892985.1 motility associated factor glycosyltransferase family protein -
  WHQ28_RS06765 (WHQ28_06765) - 1300408..1301649 (-) 1242 WP_338892987.1 DUF2920 family protein -
  WHQ28_RS06770 (WHQ28_06770) ctsG 1301649..1302164 (-) 516 WP_002799196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHQ28_RS06775 (WHQ28_06775) tsaD 1302165..1303172 (-) 1008 WP_002860794.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  WHQ28_RS06780 (WHQ28_06780) - 1303169..1304563 (-) 1395 WP_038813975.1 M99 family carboxypeptidase catalytic domain-containing protein -
  WHQ28_RS06785 (WHQ28_06785) dxr 1304565..1305635 (-) 1071 WP_032583833.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WHQ28_RS06790 (WHQ28_06790) cdsA 1305632..1306357 (-) 726 WP_002889945.1 phosphatidate cytidylyltransferase -
  WHQ28_RS06795 (WHQ28_06795) - 1306366..1306704 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=953189 WHQ28_RS06770 WP_002799196.1 1301649..1302164(-) (ctsG) [Campylobacter jejuni strain Z1323CCJ0027]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=953189 WHQ28_RS06770 WP_002799196.1 1301649..1302164(-) (ctsG) [Campylobacter jejuni strain Z1323CCJ0027]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942