Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHP30_RS07410 Genome accession   NZ_CP148232
Coordinates   1432011..1432322 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain Z1323CCJ0028     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1427011..1437322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP30_RS07390 (WHP30_07390) ctsE 1427880..1429439 (-) 1560 WP_079266714.1 GspE/PulE family protein Machinery gene
  WHP30_RS07395 (WHP30_07395) ctsX 1429429..1430016 (-) 588 WP_002851370.1 membrane protein Machinery gene
  WHP30_RS07400 (WHP30_07400) ctsP 1430020..1430628 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP30_RS07405 (WHP30_07405) ctsD 1430621..1432033 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP30_RS07410 (WHP30_07410) ctsR 1432011..1432322 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  WHP30_RS07415 (WHP30_07415) nifJ 1432346..1435906 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHP30_RS07420 (WHP30_07420) - 1435999..1436640 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=953170 WHP30_RS07410 WP_002855438.1 1432011..1432322(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0028]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=953170 WHP30_RS07410 WP_002855438.1 1432011..1432322(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0028]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1