Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACH6FV_RS03580 Genome accession   NZ_CP172391
Coordinates   711251..711799 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain YH508     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 706251..716799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FV_RS03550 (ACH6FV_03550) ctsT 706294..706599 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  ACH6FV_RS03555 (ACH6FV_03555) proC 706596..707333 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  ACH6FV_RS03560 (ACH6FV_03560) fliW 707333..707722 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  ACH6FV_RS03565 (ACH6FV_03565) - 707886..708533 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  ACH6FV_RS03570 (ACH6FV_03570) lon 708549..710924 (+) 2376 WP_002777089.1 endopeptidase La -
  ACH6FV_RS03575 (ACH6FV_03575) rpsR 710980..711240 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  ACH6FV_RS03580 (ACH6FV_03580) ssb 711251..711799 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  ACH6FV_RS03585 (ACH6FV_03585) rpsF 711808..712185 (-) 378 WP_002794143.1 30S ribosomal protein S6 -
  ACH6FV_RS03590 (ACH6FV_03590) - 712464..713735 (+) 1272 WP_002777080.1 MFS transporter -
  ACH6FV_RS03595 (ACH6FV_03595) - 713735..714736 (+) 1002 WP_002777078.1 sugar phosphate isomerase/epimerase -
  ACH6FV_RS03600 (ACH6FV_03600) - 714729..715369 (-) 641 Protein_702 DUF535 family protein -
  ACH6FV_RS03605 (ACH6FV_03605) - 715333..715584 (-) 252 WP_048813181.1 hypothetical protein -
  ACH6FV_RS03610 (ACH6FV_03610) rseP 715581..716684 (-) 1104 WP_002777070.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=953148 ACH6FV_RS03580 WP_002777084.1 711251..711799(-) (ssb) [Campylobacter coli strain YH508]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=953148 ACH6FV_RS03580 WP_002777084.1 711251..711799(-) (ssb) [Campylobacter coli strain YH508]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCGGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379