Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACH6FV_RS02925 Genome accession   NZ_CP172391
Coordinates   584521..585861 (+) Length   446 a.a.
NCBI ID   WP_002777369.1    Uniprot ID   A0ABN0EPA8
Organism   Campylobacter coli strain YH508     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 579521..590861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FV_RS02895 (ACH6FV_02895) - 579912..580469 (+) 558 WP_002777379.1 TlpA disulfide reductase family protein -
  ACH6FV_RS02900 (ACH6FV_02900) pilA 580469..581335 (+) 867 WP_002777377.1 signal recognition particle-docking protein FtsY Machinery gene
  ACH6FV_RS02905 (ACH6FV_02905) - 581332..582276 (-) 945 WP_349325235.1 GTP-binding protein -
  ACH6FV_RS02910 (ACH6FV_02910) - 582269..582604 (-) 336 WP_002777373.1 hypothetical protein -
  ACH6FV_RS02915 (ACH6FV_02915) - 582646..583527 (-) 882 WP_002790083.1 polysaccharide deacetylase -
  ACH6FV_RS02920 (ACH6FV_02920) - 583530..584385 (-) 856 Protein_566 carbon-nitrogen hydrolase family protein -
  ACH6FV_RS02925 (ACH6FV_02925) radA/sms 584521..585861 (+) 1341 WP_002777369.1 DNA repair protein RadA Machinery gene
  ACH6FV_RS02930 (ACH6FV_02930) - 586012..586692 (+) 681 WP_002777368.1 F0F1 ATP synthase subunit A -
  ACH6FV_RS02935 (ACH6FV_02935) - 586689..586889 (+) 201 WP_002777366.1 hypothetical protein -
  ACH6FV_RS02940 (ACH6FV_02940) metF 586899..587747 (-) 849 WP_349325234.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  ACH6FV_RS02945 (ACH6FV_02945) metE 587757..590021 (-) 2265 WP_002777360.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  ACH6FV_RS02950 (ACH6FV_02950) - 590044..590814 (-) 771 WP_002781303.1 MetQ/NlpA family ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49120.03 Da        Isoelectric Point: 6.9145

>NTDB_id=953140 ACH6FV_RS02925 WP_002777369.1 584521..585861(+) (radA/sms) [Campylobacter coli strain YH508]
MAKNKILFECQACGNQQSKWLGKCPECGSWDSFIELKSEQIKVLKEIAQASTKASEAICIEDVELEHFSRCSTDDDELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKKNKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKNYEILIIDSIQTLYSNKIASAAGSITQVREITFELMRVSKTYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTSEVGIFEMTPKGLISAKDLANRFFTRGKATSGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVRVNETAADLAVVAAIISSFKNRPLSKDCVFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIIPSKPLEDVGLKCFVAKELAQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=953140 ACH6FV_RS02925 WP_002777369.1 584521..585861(+) (radA/sms) [Campylobacter coli strain YH508]
ATGGCTAAAAATAAAATTCTTTTTGAATGCCAAGCTTGCGGAAATCAGCAAAGCAAATGGCTTGGAAAATGTCCTGAGTG
TGGTTCTTGGGATAGTTTTATAGAATTAAAATCTGAACAAATTAAAGTTTTAAAAGAAATCGCACAAGCAAGTACAAAAG
CAAGCGAGGCTATCTGTATAGAAGATGTGGAGCTCGAGCATTTTTCAAGGTGTAGCACTGATGATGATGAGCTGGATTTG
GTTTTAGGTGGAGGGCTTGTTGAGGGTTCTTTGGTGCTTATAGGTGGTAGCCCTGGGGTTGGCAAATCTACACTTTTACT
AAAGATTGCTTCTAATTTGGCTAAAAAAAATAAAAAAGTTCTTTATGTAAGCGGAGAAGAAAGTAAGGCGCAAATCAAAT
TAAGAGCCGATCGTCTTGAGGCTAATACTCCTAATTTATTTTTACTTACAGAGCTTTGTCTTGAAAATATTTTAGAAGAA
TTGCATAAGAAAAATTATGAAATTCTTATCATCGACTCCATACAAACCTTATATTCAAACAAAATTGCTTCAGCAGCTGG
AAGTATCACTCAAGTGCGCGAGATCACTTTTGAACTTATGCGAGTAAGCAAAACTTACAATATCAGCACTTTTATAATAG
GACATATCACCAAAGAAGGAGCCATAGCAGGCCCTAGGGTTTTAGAGCATATGGTCGATGTGGTGCTTTATTTTGAAGGG
GATGCAACTAAAGAAATCAGGCTTTTAAGGGGTTTTAAAAATCGCTTTGGTGGCACAAGCGAGGTGGGAATTTTTGAAAT
GACTCCTAAGGGTTTAATTAGTGCAAAAGATTTAGCCAATCGTTTTTTTACGCGAGGTAAAGCTACTTCAGGCAGTGCTT
TAGGTGTTGTAATGGAGGGTTCTCGTGCTTTGGTTTTAGAGGTGCAAGCTCTAGTGTGCGAGAGTTCTTATCCTAAACGC
AGTGCCACAGGCTATGAAAAAAATCGTCTTGATATGCTTTTGGCTTTACTTGAAAGAAAATTAGAAATTCCTCTTGGTCA
TTATGATGTTTTTGTAAATATTAGCGGTGGAGTAAGGGTAAATGAAACTGCGGCTGATTTGGCTGTGGTTGCGGCTATTA
TTTCTAGTTTTAAAAATCGCCCTTTGAGTAAGGATTGTGTTTTTATAGGGGAATTGAGTTTAAATGGAGAAATAAGAGAA
GTTTTTAGTCTTGATACCCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCTATTATTCCATCTAAACCTTTAGA
AGATGTAGGGCTTAAATGCTTTGTAGCCAAAGAGCTTGCCCAAGTTTTAGAATGGATGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(71-220)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

45.37

96.861

0.439
  radA Streptococcus pneumoniae Rx1

44.47

97.309

0.433
  radA Streptococcus pneumoniae D39

44.47

97.309

0.433
  radA Streptococcus pneumoniae R6

44.47

97.309

0.433
  radA Streptococcus pneumoniae TIGR4

44.47

97.309

0.433
  radA Streptococcus mitis SK321

44.444

96.861

0.43
  radA Streptococcus mitis NCTC 12261

44.444

96.861

0.43