Detailed information NTG0953129

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: WHQ20_RS05825
• Genome accession: NZ_CP148231
• Coordinates: 1110049..1110999 (+)
• Length: 316 a.a.
• NCBI ID: WP_002899461.1
• Uniprot ID: A0A5Z1S6J2
• Organism: Campylobacter jejuni strain Z1323CCJ0029
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1105049..1115999

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WHQ20_RS05810 (WHQ20_05810)	-	1105897..1107828 (-)	1932	WP_052785346.1	hypothetical protein	-
WHQ20_RS05815 (WHQ20_05815)	-	1107904..1109178 (+)	1275	WP_052785345.1	DUF2972 domain-containing protein	-
WHQ20_RS05820 (WHQ20_05820)	-	1109142..1109990 (-)	849	WP_002899460.1	glycosyltransferase family 2 protein	-
WHQ20_RS05825 (WHQ20_05825)	waaF	1110049..1110999 (+)	951	WP_002899461.1	lipopolysaccharide heptosyltransferase II	Regulator
WHQ20_RS05830 (WHQ20_05830)	-	1110985..1111749 (-)	765	WP_002899462.1	glycosyltransferase family 25 protein	-
WHQ20_RS05835 (WHQ20_05835)	gmhA	1111749..1112309 (-)	561	WP_002881439.1	D-sedoheptulose 7-phosphate isomerase	-
WHQ20_RS05840 (WHQ20_05840)	rfaE1	1112306..1113691 (-)	1386	WP_052785344.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
WHQ20_RS05845 (WHQ20_05845)	rfaD	1113684..1114637 (-)	954	WP_038813706.1	ADP-glyceromanno-heptose 6-epimerase	-
WHQ20_RS05850 (WHQ20_05850)	gmhB	1114638..1115198 (-)	561	WP_052794772.1	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
WHQ20_RS05855 (WHQ20_05855)	-	1115280..1115582 (+)	303	WP_002852762.1	cytochrome c	-
WHQ20_RS05860 (WHQ20_05860)	ccoS	1115605..1115811 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 316 a.a.
• Molecular weight: 36265.84 Da
• Isoelectric Point: 10.2322

>NTDB_id=953129 WHQ20_RS05825 WP_002899461.1 1110049..1110999(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0029]
MKIFIHLPTWLGDAVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLGIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI

Nucleotide

• Length: 951 bp

>NTDB_id=953129 WHQ20_RS05825 WP_002899461.1 1110049..1110999(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0029]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCACGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGTTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGGCATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGATAGT
GGCCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGTCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAACGAAAATGCAAAATTAGTACATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

3D structure

• AlphaFold DB: A0A5Z1S6J2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	95.541	99.367	0.949