Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACH6F0_RS03835 Genome accession   NZ_CP172390
Coordinates   741704..742252 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain YH509     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 736704..747252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6F0_RS03805 (ACH6F0_03805) ctsT 736747..737052 (-) 306 WP_002777852.1 hypothetical protein Machinery gene
  ACH6F0_RS03810 (ACH6F0_03810) proC 737049..737786 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  ACH6F0_RS03815 (ACH6F0_03815) fliW 737786..738175 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  ACH6F0_RS03820 (ACH6F0_03820) - 738339..738986 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  ACH6F0_RS03825 (ACH6F0_03825) lon 739002..741377 (+) 2376 WP_002783351.1 endopeptidase La -
  ACH6F0_RS03830 (ACH6F0_03830) rpsR 741433..741693 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  ACH6F0_RS03835 (ACH6F0_03835) ssb 741704..742252 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  ACH6F0_RS03840 (ACH6F0_03840) rpsF 742261..742638 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  ACH6F0_RS03845 (ACH6F0_03845) - 742918..744189 (+) 1272 WP_002777080.1 MFS transporter -
  ACH6F0_RS03850 (ACH6F0_03850) - 744189..745190 (+) 1002 WP_002780256.1 sugar phosphate isomerase/epimerase -
  ACH6F0_RS03855 (ACH6F0_03855) - 745183..745824 (-) 642 Protein_753 DUF535 family protein -
  ACH6F0_RS03860 (ACH6F0_03860) rseP 746036..747139 (-) 1104 WP_021033695.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=953103 ACH6F0_RS03835 WP_002777084.1 741704..742252(-) (ssb) [Campylobacter coli strain YH509]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=953103 ACH6F0_RS03835 WP_002777084.1 741704..742252(-) (ssb) [Campylobacter coli strain YH509]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCGGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379