Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   WHP32_RS07240 Genome accession   NZ_CP148227
Coordinates   1415966..1417378 (-) Length   470 a.a.
NCBI ID   WP_002862130.1    Uniprot ID   A0A1E7P8U9
Organism   Campylobacter jejuni strain Z1323CCJ0040     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1410966..1422378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP32_RS07215 (WHP32_07215) - 1411290..1412054 (+) 765 WP_002851426.1 TSUP family transporter -
  WHP32_RS07220 (WHP32_07220) ctsF 1412047..1413228 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  WHP32_RS07225 (WHP32_07225) ctsE 1413225..1414784 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  WHP32_RS07230 (WHP32_07230) ctsX 1414774..1415361 (-) 588 WP_002851370.1 membrane protein Machinery gene
  WHP32_RS07235 (WHP32_07235) ctsP 1415365..1415973 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP32_RS07240 (WHP32_07240) ctsD 1415966..1417378 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP32_RS07245 (WHP32_07245) ctsR 1417356..1417667 (-) 312 WP_015016496.1 hypothetical protein Machinery gene
  WHP32_RS07250 (WHP32_07250) nifJ 1417691..1421251 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHP32_RS07255 (WHP32_07255) - 1421344..1421985 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53055.57 Da        Isoelectric Point: 6.6184

>NTDB_id=953085 WHP32_RS07240 WP_002862130.1 1415966..1417378(-) (ctsD) [Campylobacter jejuni strain Z1323CCJ0040]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=953085 WHP32_RS07240 WP_002862130.1 1415966..1417378(-) (ctsD) [Campylobacter jejuni strain Z1323CCJ0040]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAACGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTCAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTGGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGATGCAGAAGACAACATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCACAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGCGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATCGTTTTTATTATCACTCCAAGTATAGTAG
ATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E7P8U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.574

100

0.996